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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4018 1ms9_A)  (  664 1cru_A)     0.7991   0.7401   5.2516 (   0   98  190)   1     0.8378   0.7763   25  27
( 4018 1ms9_A)  (  666 1crz_A)     0.2800   0.3182   4.4079 (   0   10   21)   0     0.7992   0.9076   25  22
( 4018 1ms9_A)  (  999 1e1a_A)     0.3600   0.3750   3.9165 (   0   22   36)   0     0.8384   0.8730   25  24
( 4018 1ms9_A)  ( 1269 1eur  )     0.8397   0.8746   3.7516 (   0  123  210)   0     0.8397   0.8746   25  24
( 4018 1ms9_A)  ( 1434 1f8e_A)     0.3200   0.3333   5.0906 (   0   14   28)   0     0.8250   0.8568   25  24
( 4018 1ms9_A)  ( 2105 1h6l_A)     0.3600   0.3600   3.8795 (   0   14   36)   0     0.6303   0.6303   25  25
( 4018 1ms9_A)  ( 2515 1ijq_A)     0.2800   0.2917   4.0154 (   0   12   21)   0     0.8388   0.8736   25  24
( 4018 1ms9_A)  ( 3147 1k32_A)     0.3200   0.3200   4.7998 (   0   12   28)   0     0.8377   0.8377   25  25
( 4018 1ms9_A)  ( 3315 1kit  )     0.2800   0.8727   5.8710 (   0    8   21)   0     0.3200   0.9985   25   8
( 4018 1ms9_A)  ( 4018 1ms9_A)     1.0000   1.0000   0.0000 (   0  216  300)   0     1.0000   1.0000   25  25
( 4018 1ms9_A)  ( 4346 1npe_A)     0.3200   0.3333   3.9354 (   0   11   28)   0     0.8389   0.8736   25  24
( 4018 1ms9_A)  ( 4375 1nsc_A)     0.3600   0.3600   4.9911 (   0   21   36)   0     0.4909   0.4909   25  25
( 4018 1ms9_A)  ( 4636 1ofz_A)     0.4400   0.4231   4.0945 (   0   31   55)   0     0.8391   0.8069   25  26
( 4018 1ms9_A)  ( 5229 1q7f_A)     0.3200   0.3200   4.4269 (   0   15   28)   0     0.7131   0.7131   25  25
( 4018 1ms9_A)  ( 5713 1rwi_A)     0.4513   0.4587   5.7463 (  18   84  171)   0     0.7594   0.9032   25  21
( 4018 1ms9_A)  ( 5861 1suu_A)     0.2135   0.2138   6.0009 (  36   77  153)   3     0.7192   0.9958   25  18
( 4018 1ms9_A)  ( 6099 1usr_A)     0.7985   0.6246   5.9099 (   1  104  190)   1     0.8762   0.6864   25  32
( 4018 1ms9_A)  ( 6154 1v04_A)     0.4000   0.3704   4.0956 (   0   27   45)   0     0.8388   0.7770   25  27
( 4018 1ms9_A)  ( 6165 1v3e_A)     0.2827   0.2815   5.2609 (  37  105  190)   0     0.7149   0.6495   25  30
( 4018 1ms9_A)  ( 6533 2sli  )     0.5200   0.3939   3.6244 (   0   52   78)   0     0.7590   0.5755   25  33
( 4018 1ms9_A)  ( 6598 3sil  )     0.8796   0.9161   3.8277 (   1  148  231)   0     0.9187   0.9567   25  24

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