------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [4018, 664]: Comparing 1ms9_A and 1cru_A, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 38 (7 H + 31 S) secondary structure elements in 1cru_A, of which 27 satisfy the size requirements. 1.25148 [ 1.35118] ((1 . 11) (4 . 12) (5 . 13) (6 . 16) (7 . 19) (8 . 20) (9 . 21) (11 . 22) (19 . 31) (20 . 32) (22 . 34) (23 . 35) (24 . 38) (26 . 3) (27 . 4) (28 . 5) (29 . 6) (30 . 7) (31 . 8) (32 . 9)) 5.252 {0/98:190} B:1 1.35704 [ 1.45419] ((4 . 12) (5 . 13) (6 . 16) (7 . 19) (8 . 20) (9 . 21) (11 . 22) (19 . 31) (20 . 32) (22 . 34) (23 . 35) (24 . 38) (26 . 3) (27 . 4) (28 . 5) (29 . 6) (30 . 7) (31 . 8) (32 . 11)) 5.211 {7/89:171} B:1 1.49533 [ 1.55719] ((1 . 33) (4 . 34) (5 . 35) (6 . 38) (7 . 2) (8 . 3) (9 . 4) (11 . 5) (16 . 7) (19 . 8) (20 . 9) (22 . 12) (23 . 13) (24 . 16) (26 . 20) (27 . 21) (28 . 22) (29 . 27) (30 . 31) (31 . 32)) 6.076 {13/103:190} B:1 1.19365 [ 1.28824] ((1 . 19) (4 . 20) (5 . 21) (6 . 22) (7 . 27) (8 . 34) (9 . 31) (11 . 32) (13 . 33) (19 . 35) (20 . 38) (22 . 3) (23 . 4) (24 . 5) (26 . 7) (27 . 8) (28 . 9) (29 . 10) (30 . 12) (31 . 13) (32 . 16)) 6.128 {0/122:210} B:2 3.26800 [ 3.27230] ((1 . 6) (2 . 10) (4 . 7) (5 . 8) (6 . 9) (7 . 11) (8 . 12) (9 . 13) (11 . 16) (16 . 20) (19 . 21) (20 . 22) (22 . 31) (23 . 32) (24 . 33) (26 . 34) (27 . 35) (28 . 38) (29 . 2) (30 . 3) (31 . 4) (32 . 5)) 6.327 {42/129:231} B:2 SIMILARITY (1/min{score1}): 0.8378 [and 1/min{score2}: 0.7763] [4018, 666]: Comparing 1ms9_A and 1crz_A, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 34 (4 H + 30 S) secondary structure elements in 1crz_A, of which 22 satisfy the size requirements. 3.57146 [ 3.14290] ((5 . 11) (6 . 12) (8 . 14) (9 . 15) (20 . 24) (22 . 26) (23 . 27)) 4.408 {0/10:21} B:0 3.57150 [ 3.14296] ((7 . 17) (9 . 19) (19 . 27) (20 . 28) (22 . 30) (23 . 31) (24 . 32)) 5.354 {0/13:21} B:0 3.57156 [ 3.14305] ((19 . 19) (20 . 20) (22 . 22) (23 . 23) (24 . 24) (26 . 28) (28 . 30)) 6.330 {0/11:21} B:0 4.16667 [ 3.66668] ((19 . 11) (20 . 12) (22 . 14) (23 . 15) (24 . 16) (28 . 22)) 3.298 {0/4:15} B:0 4.16668 [ 3.66668] ((19 . 11) (20 . 12) (22 . 14) (23 . 15) (24 . 16) (30 . 24)) 3.597 {0/7:15} B:0 SIMILARITY (1/min{score1}): 0.7992 [and 1/min{score2}: 0.9076] [4018, 999]: Comparing 1ms9_A and 1e1a_A, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 30 (1 H + 29 S) secondary structure elements in 1e1a_A, of which 24 satisfy the size requirements. 2.77782 [ 2.66671] ((19 . 4) (20 . 7) (22 . 11) (23 . 12) (24 . 13) (28 . 17) (29 . 18) (30 . 19) (31 . 20)) 3.917 {0/22:36} B:0 3.12504 [ 3.00005] ((19 . 12) (20 . 13) (22 . 15) (23 . 16) (27 . 20) (28 . 21) (29 . 22) (31 . 24)) 4.279 {0/15:28} B:0 3.12507 [ 3.00008] ((22 . 15) (23 . 16) (27 . 20) (28 . 21) (29 . 22) (30 . 23) (31 . 24) (32 . 25)) 4.819 {0/11:28} B:0 3.57145 [ 3.42860] ((1 . 12) (4 . 15) (5 . 16) (6 . 17) (7 . 18) (8 . 19) (9 . 20)) 3.977 {0/10:21} B:0 3.57147 [ 3.42862] ((1 . 16) (4 . 19) (5 . 20) (6 . 21) (7 . 22) (8 . 23) (9 . 24)) 4.829 {0/8:21} B:0 SIMILARITY (1/min{score1}): 0.8384 [and 1/min{score2}: 0.8730] [4018, 1269]: Comparing 1ms9_A and 1eur, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 31 (3 H + 28 S) secondary structure elements in 1eur, of which 24 satisfy the size requirements. 1.19092 [ 1.14336] ((1 . 1) (4 . 2) (5 . 3) (6 . 4) (7 . 5) (8 . 6) (9 . 7) (11 . 8) (16 . 11) (19 . 14) (20 . 15) (22 . 17) (23 . 18) (24 . 19) (26 . 22) (27 . 24) (28 . 25) (29 . 26) (30 . 28) (31 . 29) (32 . 30)) 3.752 {0/123:210} B:0 1.31610 [ 1.26351] ((4 . 2) (5 . 3) (6 . 4) (7 . 5) (8 . 6) (9 . 7) (11 . 8) (16 . 11) (19 . 14) (20 . 15) (22 . 17) (23 . 18) (24 . 19) (27 . 24) (28 . 25) (29 . 26) (30 . 28) (31 . 29) (32 . 30)) 3.705 {0/99:171} B:0 3.57148 [ 3.42863] ((4 . 22) (5 . 24) (6 . 25) (7 . 26) (8 . 28) (9 . 29) (11 . 30)) 5.045 {0/9:21} B:0 3.57159 [ 3.42875] ((11 . 11) (19 . 18) (20 . 19) (22 . 22) (26 . 28) (27 . 29) (28 . 30)) 6.609 {0/12:21} B:0 3.57182 [ 3.42901] ((2 . 5) (5 . 7) (6 . 8) (7 . 9) (9 . 14) (11 . 15) (20 . 22)) 8.253 {0/13:21} B:0 SIMILARITY (1/min{score1}): 0.8397 [and 1/min{score2}: 0.8746] [4018, 1434]: Comparing 1ms9_A and 1f8e_A, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 30 (3 H + 27 S) secondary structure elements in 1f8e_A, of which 24 satisfy the size requirements. 3.12508 [ 3.00009] ((5 . 14) (6 . 15) (7 . 16) (8 . 17) (9 . 18) (22 . 26) (23 . 28) (24 . 29)) 5.091 {0/14:28} B:0 3.12509 [ 3.00010] ((19 . 6) (20 . 8) (27 . 14) (28 . 15) (29 . 16) (30 . 17) (31 . 18) (32 . 19)) 5.168 {0/16:28} B:0 3.12516 [ 3.00018] ((9 . 14) (11 . 15) (13 . 16) (23 . 22) (24 . 23) (26 . 26) (27 . 28) (28 . 29)) 5.976 {0/16:28} B:0 3.57144 [ 3.42859] ((19 . 14) (20 . 15) (22 . 17) (23 . 18) (24 . 19) (27 . 22) (28 . 23)) 3.532 {0/12:21} B:0 3.57145 [ 3.42860] ((22 . 5) (23 . 6) (27 . 11) (28 . 12) (29 . 13) (31 . 14) (32 . 15)) 4.195 {0/5:21} B:0 SIMILARITY (1/min{score1}): 0.8250 [and 1/min{score2}: 0.8568] [4018, 2105]: Comparing 1ms9_A and 1h6l_A, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 32 (4 H + 28 S) secondary structure elements in 1h6l_A, of which 25 satisfy the size requirements. 2.77782 [ 2.77782] ((19 . 14) (20 . 15) (22 . 17) (23 . 18) (24 . 19) (27 . 23) (30 . 27) (31 . 28) (32 . 31)) 3.880 {0/14:36} B:0 3.12502 [ 3.12502] ((19 . 18) (20 . 19) (22 . 21) (23 . 23) (24 . 25) (26 . 27) (27 . 28) (28 . 31)) 3.619 {0/14:28} B:0 3.12505 [ 3.12505] ((5 . 5) (19 . 18) (20 . 19) (22 . 21) (23 . 23) (24 . 25) (27 . 28) (28 . 31)) 4.498 {0/15:28} B:0 3.12507 [ 3.12507] ((19 . 14) (20 . 15) (24 . 19) (26 . 21) (27 . 23) (30 . 27) (31 . 28) (32 . 31)) 4.932 {0/12:28} B:0 3.57145 [ 3.57145] ((26 . 21) (27 . 23) (28 . 25) (29 . 26) (30 . 27) (31 . 28) (32 . 31)) 4.084 {0/9:21} B:0 SIMILARITY (1/min{score1}): 0.6303 [and 1/min{score2}: 0.6303] [4018, 2515]: Comparing 1ms9_A and 1ijq_A, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 30 (2 H + 28 S) secondary structure elements in 1ijq_A, of which 24 satisfy the size requirements. 3.57145 [ 3.42860] ((19 . 9) (20 . 10) (22 . 12) (23 . 13) (24 . 14) (28 . 20) (29 . 21)) 4.015 {0/12:21} B:0 3.57147 [ 3.42861] ((8 . 8) (9 . 9) (19 . 17) (20 . 18) (22 . 20) (23 . 21) (24 . 22)) 4.631 {0/11:21} B:0 4.16668 [ 4.00002] ((8 . 4) (9 . 5) (19 . 13) (20 . 14) (22 . 16) (23 . 17)) 4.191 {0/5:15} B:0 4.16669 [ 4.00002] ((20 . 2) (22 . 4) (23 . 5) (24 . 6) (28 . 12) (29 . 13)) 4.504 {0/9:15} B:0 4.16669 [ 4.00003] ((1 . 17) (4 . 20) (5 . 21) (6 . 22) (7 . 23) (8 . 24)) 4.544 {0/10:15} B:0 SIMILARITY (1/min{score1}): 0.8388 [and 1/min{score2}: 0.8736] [4018, 3147]: Comparing 1ms9_A and 1k32_A, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 94 (19 H + 75 S) secondary structure elements in 1k32_A, of which 25 satisfy the size requirements. 3.12507 [ 3.12507] ((4 . 5) (5 . 6) (6 . 7) (7 . 8) (8 . 11) (9 . 12) (22 . 24) (23 . 25)) 4.800 {0/12:28} B:0 3.57147 [ 3.57147] ((4 . 5) (5 . 6) (6 . 7) (19 . 21) (20 . 22) (22 . 24) (23 . 25)) 4.770 {0/9:21} B:0 3.57148 [ 3.57148] ((8 . 1) (9 . 2) (22 . 16) (23 . 17) (24 . 18) (27 . 21) (28 . 22)) 4.920 {0/5:21} B:0 3.57149 [ 3.57149] ((4 . 1) (5 . 2) (19 . 17) (20 . 18) (22 . 20) (23 . 21) (24 . 22)) 5.201 {0/7:21} B:0 3.57150 [ 3.57150] ((16 . 3) (26 . 16) (27 . 17) (28 . 18) (29 . 19) (30 . 20) (31 . 21)) 5.419 {0/12:21} B:0 SIMILARITY (1/min{score1}): 0.8377 [and 1/min{score2}: 0.8377] [4018, 3315]: Comparing 1ms9_A and 1kit, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 74 (9 H + 65 S) secondary structure elements in 1kit, of which 8 satisfy the size requirements. 3.57153 [ 1.14588] ((22 . 22) (23 . 23) (24 . 24) (26 . 26) (27 . 27) (28 . 29) (29 . 30)) 5.871 {0/8:21} B:0 3.57154 [ 1.14621] ((2 . 21) (4 . 22) (5 . 23) (6 . 24) (8 . 26) (9 . 27) (11 . 29)) 6.023 {0/10:21} B:0 4.16669 [ 1.33411] ((7 . 21) (8 . 22) (9 . 23) (11 . 24) (19 . 27) (20 . 29)) 4.694 {0/8:15} B:0 4.16685 [ 1.33889] ((2 . 22) (4 . 23) (5 . 24) (8 . 27) (9 . 29) (11 . 30)) 7.677 {0/6:15} B:0 4.88546 [ 4.66919] ((20 . 21) (22 . 22) (23 . 23) (24 . 24) (26 . 26) (27 . 27) (28 . 29) (29 . 30)) 6.515 {7/15:28} B:0 SIMILARITY (1/min{score1}): 0.3200 [and 1/min{score2}: 0.9985] [4018, 4018]: Comparing 1ms9_A and 1ms9_A, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (11 . 11) (13 . 13) (16 . 16) (19 . 19) (20 . 20) (22 . 22) (23 . 23) (24 . 24) (26 . 26) (27 . 27) (28 . 28) (29 . 29) (30 . 30) (31 . 31) (32 . 32) (33 . 33)) 0.000 {0/216:300} B:0 1.13016 [ 1.13016] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (11 . 13) (16 . 16) (19 . 19) (20 . 20) (22 . 22) (23 . 23) (24 . 24) (26 . 26) (27 . 27) (28 . 28) (29 . 29) (30 . 30) (31 . 31) (32 . 32) (33 . 33)) 2.645 {16/195:276} B:0 1.13016 [ 1.13016] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (13 . 11) (16 . 16) (19 . 19) (20 . 20) (22 . 22) (23 . 23) (24 . 24) (26 . 26) (27 . 27) (28 . 28) (29 . 29) (30 . 30) (31 . 31) (32 . 32) (33 . 33)) 2.645 {16/195:276} B:0 3.12505 [ 3.12505] ((8 . 4) (9 . 5) (23 . 19) (24 . 20) (27 . 23) (30 . 26) (31 . 27) (32 . 28)) 4.358 {0/7:28} B:0 3.12505 [ 3.12505] ((4 . 8) (5 . 9) (19 . 23) (20 . 24) (23 . 27) (26 . 30) (27 . 31) (28 . 32)) 4.358 {0/7:28} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [4018, 4346]: Comparing 1ms9_A and 1npe_A, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 25 (1 H + 24 S) secondary structure elements in 1npe_A, of which 24 satisfy the size requirements. 3.12503 [ 3.00003] ((5 . 1) (6 . 2) (7 . 4) (8 . 5) (9 . 6) (19 . 14) (22 . 17) (23 . 18)) 3.935 {0/11:28} B:0 3.12505 [ 3.00005] ((7 . 4) (8 . 5) (9 . 6) (19 . 14) (20 . 15) (22 . 17) (23 . 18) (24 . 19)) 4.414 {0/17:28} B:0 3.57145 [ 3.42860] ((19 . 10) (20 . 11) (22 . 13) (23 . 14) (24 . 15) (28 . 21) (29 . 22)) 4.156 {0/11:21} B:0 3.57146 [ 3.42860] ((4 . 5) (8 . 9) (9 . 10) (19 . 18) (20 . 19) (22 . 21) (23 . 22)) 4.248 {0/6:21} B:0 3.57146 [ 3.42861] ((19 . 6) (20 . 7) (22 . 9) (23 . 10) (24 . 11) (28 . 17) (29 . 18)) 4.354 {0/11:21} B:0 SIMILARITY (1/min{score1}): 0.8389 [and 1/min{score2}: 0.8736] [4018, 4375]: Comparing 1ms9_A and 1nsc_A, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 30 (2 H + 28 S) secondary structure elements in 1nsc_A, of which 25 satisfy the size requirements. 2.77789 [ 2.77789] ((19 . 5) (20 . 6) (26 . 14) (27 . 15) (28 . 16) (29 . 17) (30 . 19) (31 . 20) (32 . 21)) 4.991 {0/21:36} B:0 2.77795 [ 2.77795] ((4 . 4) (11 . 11) (13 . 12) (26 . 23) (27 . 24) (28 . 25) (29 . 26) (30 . 28) (31 . 29)) 5.566 {0/19:36} B:0 3.12506 [ 3.12506] ((5 . 15) (6 . 16) (7 . 17) (8 . 19) (9 . 20) (22 . 28) (23 . 29) (24 . 30)) 4.720 {0/14:28} B:0 3.57149 [ 3.57149] ((7 . 12) (9 . 15) (19 . 22) (24 . 25) (26 . 28) (27 . 29) (28 . 30)) 5.148 {0/14:21} B:0 3.57149 [ 3.57149] ((1 . 15) (4 . 19) (5 . 20) (6 . 21) (7 . 22) (19 . 29) (20 . 30)) 5.170 {0/11:21} B:0 SIMILARITY (1/min{score1}): 0.4909 [and 1/min{score2}: 0.4909] [4018, 4636]: Comparing 1ms9_A and 1ofz_A, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 28 (2 H + 26 S) secondary structure elements in 1ofz_A, of which 26 satisfy the size requirements. 2.27282 [ 2.36372] ((19 . 2) (20 . 3) (22 . 7) (23 . 8) (24 . 9) (27 . 13) (28 . 14) (29 . 15) (30 . 16) (31 . 17) (32 . 18)) 4.094 {0/31:55} B:0 1.31710 [ 1.36958] ((1 . 24) (4 . 25) (5 . 26) (6 . 27) (8 . 1) (9 . 2) (11 . 3) (19 . 8) (20 . 9) (22 . 12) (23 . 13) (24 . 14) (26 . 16) (27 . 17) (28 . 18) (29 . 20) (30 . 21) (31 . 22) (32 . 23)) 5.289 {0/87:171} B:1 1.43971 [ 1.47326] ((1 . 24) (4 . 25) (5 . 26) (6 . 27) (8 . 1) (9 . 2) (11 . 3) (16 . 6) (19 . 8) (20 . 9) (22 . 12) (23 . 13) (24 . 14) (26 . 16) (27 . 17) (28 . 18) (29 . 20) (30 . 21) (31 . 22) (32 . 23)) 5.361 {12/103:190} B:1 1.74540 [ 1.76458] ((4 . 1) (5 . 2) (6 . 3) (7 . 6) (8 . 7) (9 . 9) (11 . 8) (13 . 10) (19 . 13) (20 . 14) (22 . 16) (23 . 17) (24 . 18) (26 . 21) (27 . 22) (28 . 23) (29 . 24) (30 . 25) (31 . 26) (32 . 27)) 5.757 {16/99:190} B:1 1.19178 [ 1.23926] ((1 . 15) (2 . 19) (4 . 16) (5 . 17) (6 . 18) (7 . 20) (8 . 21) (9 . 22) (11 . 23) (19 . 26) (20 . 27) (22 . 1) (23 . 2) (24 . 3) (26 . 7) (27 . 8) (28 . 9) (29 . 10) (30 . 12) (31 . 13) (32 . 14)) 4.904 {0/122:210} B:2 SIMILARITY (1/min{score1}): 0.8391 [and 1/min{score2}: 0.8069] [4018, 5229]: Comparing 1ms9_A and 1q7f_A, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 28 (3 H + 25 S) secondary structure elements in 1q7f_A, of which 25 satisfy the size requirements. 3.12505 [ 3.12505] ((19 . 9) (20 . 11) (22 . 13) (23 . 14) (24 . 15) (28 . 22) (29 . 23) (31 . 27)) 4.427 {0/15:28} B:0 3.12508 [ 3.12508] ((7 . 2) (8 . 3) (9 . 4) (19 . 14) (20 . 15) (22 . 17) (23 . 18) (24 . 20)) 5.038 {0/18:28} B:0 3.57145 [ 3.57145] ((19 . 4) (20 . 6) (22 . 8) (23 . 9) (24 . 11) (28 . 17) (29 . 18)) 4.087 {0/12:21} B:0 3.57146 [ 3.57146] ((6 . 6) (7 . 7) (8 . 8) (9 . 9) (19 . 18) (22 . 22) (23 . 23)) 4.537 {0/9:21} B:0 3.57147 [ 3.57147] ((8 . 13) (9 . 14) (19 . 23) (20 . 24) (22 . 26) (23 . 27) (24 . 28)) 4.664 {0/11:21} B:0 SIMILARITY (1/min{score1}): 0.7131 [and 1/min{score2}: 0.7131] [4018, 5713]: Comparing 1ms9_A and 1rwi_A, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 28 (4 H + 24 S) secondary structure elements in 1rwi_A, of which 21 satisfy the size requirements. 2.21564 [ 2.18021] ((1 . 1) (4 . 2) (5 . 3) (6 . 4) (7 . 5) (8 . 6) (9 . 7) (16 . 8) (19 . 10) (20 . 11) (22 . 15) (23 . 16) (24 . 18) (26 . 20) (27 . 21) (28 . 22) (30 . 24) (31 . 25) (32 . 27)) 5.746 {18/84:171} B:0 1.31691 [ 1.10714] ((4 . 24) (5 . 25) (6 . 27) (7 . 1) (8 . 2) (9 . 3) (11 . 4) (19 . 7) (20 . 8) (22 . 10) (23 . 11) (24 . 13) (26 . 15) (27 . 16) (28 . 18) (29 . 19) (30 . 20) (31 . 21) (32 . 22)) 5.083 {0/90:171} B:1 1.31854 [ 1.10989] ((1 . 5) (4 . 6) (5 . 7) (6 . 8) (8 . 10) (9 . 11) (16 . 13) (19 . 16) (20 . 18) (22 . 20) (23 . 21) (24 . 22) (26 . 24) (27 . 25) (28 . 27) (29 . 1) (30 . 2) (31 . 3) (32 . 4)) 5.536 {3/93:171} B:1 4.05895 [ 4.05332] ((4 . 7) (5 . 10) (6 . 11) (7 . 13) (8 . 15) (9 . 16) (11 . 18) (16 . 20) (19 . 21) (20 . 22) (22 . 24) (23 . 25) (24 . 27) (26 . 2) (27 . 3) (28 . 4) (29 . 5) (30 . 6) (31 . 8)) 6.160 {34/84:171} B:1 5.40146 [ 5.39986] ((1 . 1) (4 . 2) (5 . 3) (6 . 4) (7 . 5) (8 . 6) (9 . 7) (11 . 8) (16 . 10) (19 . 11) (20 . 13) (22 . 16) (23 . 18) (24 . 19) (26 . 15) (27 . 20) (28 . 21) (29 . 22) (30 . 24) (31 . 25) (32 . 27)) 6.390 {61/113:210} B:1 SIMILARITY (1/min{score1}): 0.7594 [and 1/min{score2}: 0.9032] [4018, 5861]: Comparing 1ms9_A and 1suu_A, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 30 (7 H + 23 S) secondary structure elements in 1suu_A, of which 18 satisfy the size requirements. 4.68445 [ 4.67782] ((1 . 2) (4 . 5) (5 . 10) (6 . 6) (7 . 7) (8 . 15) (9 . 11) (11 . 12) (19 . 16) (20 . 17) (22 . 20) (23 . 21) (24 . 22) (26 . 25) (27 . 26) (28 . 27) (30 . 30) (31 . 1)) 6.001 {36/77:153} B:3 5.37191 [ 5.36751] ((1 . 2) (4 . 5) (5 . 10) (6 . 6) (7 . 7) (8 . 15) (9 . 11) (16 . 12) (19 . 16) (20 . 17) (22 . 20) (23 . 21) (24 . 22) (27 . 25) (28 . 26) (29 . 27) (30 . 30) (31 . 1)) 6.366 {44/82:153} B:3 3.89649 [ 3.88494] ((4 . 5) (5 . 1) (6 . 2) (8 . 10) (9 . 6) (11 . 7) (19 . 11) (20 . 12) (22 . 15) (23 . 16) (24 . 17) (26 . 20) (27 . 25) (28 . 21) (29 . 22) (30 . 30) (31 . 26) (32 . 27)) 5.747 {26/67:153} B:4 4.02323 [ 4.00639] ((4 . 5) (5 . 1) (8 . 10) (9 . 6) (11 . 7) (16 . 11) (19 . 15) (20 . 16) (22 . 20) (23 . 21) (24 . 22) (26 . 26) (27 . 25) (28 . 27) (30 . 30) (31 . 2)) 7.117 {16/40:120} B:4 5.32266 [ 5.31814] ((1 . 22) (4 . 30) (5 . 26) (6 . 27) (8 . 5) (9 . 1) (11 . 2) (19 . 6) (20 . 7) (22 . 10) (23 . 11) (24 . 12) (27 . 15) (28 . 16) (29 . 17) (30 . 20) (31 . 25) (32 . 21)) 5.477 {42/79:153} B:4 SIMILARITY (1/min{score1}): 0.7192 [and 1/min{score2}: 0.9958] [4018, 6099]: Comparing 1ms9_A and 1usr_A, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 35 (7 H + 28 S) secondary structure elements in 1usr_A, of which 32 satisfy the size requirements. 1.25239 [ 1.60114] ((1 . 14) (4 . 16) (5 . 18) (6 . 22) (7 . 23) (8 . 24) (9 . 25) (11 . 26) (13 . 27) (19 . 30) (20 . 31) (22 . 33) (23 . 34) (24 . 35) (27 . 6) (28 . 7) (29 . 9) (30 . 10) (31 . 11) (32 . 13)) 5.910 {1/104:190} B:1 1.46208 [ 1.67930] ((1 . 14) (4 . 16) (5 . 18) (6 . 22) (7 . 23) (8 . 24) (9 . 25) (11 . 26) (13 . 27) (19 . 30) (20 . 31) (22 . 33) (23 . 34) (24 . 35) (26 . 6) (27 . 5) (28 . 7) (29 . 9) (30 . 10) (31 . 11) (32 . 13)) 6.686 {14/111:210} B:2 2.86584 [ 2.90112] ((4 . 5) (5 . 6) (6 . 7) (7 . 9) (8 . 10) (9 . 11) (11 . 13) (13 . 8) (16 . 16) (19 . 18) (20 . 22) (22 . 24) (23 . 25) (24 . 26) (26 . 29) (27 . 30) (28 . 28) (29 . 31) (30 . 33) (31 . 34) (32 . 35)) 6.114 {31/109:210} B:2 3.28722 [ 3.31078] ((1 . 14) (4 . 16) (5 . 18) (6 . 22) (7 . 23) (8 . 24) (9 . 25) (11 . 26) (13 . 27) (19 . 29) (20 . 30) (22 . 33) (23 . 34) (24 . 35) (26 . 6) (27 . 5) (28 . 7) (29 . 9) (30 . 10) (31 . 11) (32 . 13)) 7.041 {36/110:210} B:2 3.66642 [ 3.68710] ((1 . 23) (4 . 24) (5 . 25) (6 . 26) (7 . 28) (8 . 33) (9 . 29) (11 . 30) (19 . 34) (20 . 35) (22 . 5) (23 . 7) (24 . 8) (26 . 10) (27 . 11) (28 . 13) (29 . 14) (30 . 17) (31 . 18) (32 . 22)) 6.367 {38/104:190} B:2 SIMILARITY (1/min{score1}): 0.8762 [and 1/min{score2}: 0.6864] [4018, 6154]: Comparing 1ms9_A and 1v04_A, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 30 (5 H + 25 S) secondary structure elements in 1v04_A, of which 27 satisfy the size requirements. 2.50007 [ 2.70005] ((19 . 14) (20 . 16) (22 . 18) (23 . 19) (24 . 21) (28 . 26) (29 . 27) (30 . 28) (31 . 29) (32 . 30)) 4.096 {0/27:45} B:0 2.77781 [ 3.00002] ((22 . 3) (23 . 4) (24 . 5) (27 . 10) (28 . 11) (29 . 12) (30 . 13) (31 . 14) (32 . 16)) 3.597 {0/19:36} B:0 3.12504 [ 3.37503] ((24 . 5) (26 . 9) (27 . 10) (28 . 11) (29 . 12) (30 . 13) (31 . 14) (32 . 16)) 4.161 {0/16:28} B:0 3.12507 [ 3.37506] ((19 . 14) (20 . 16) (27 . 24) (28 . 26) (29 . 27) (30 . 28) (31 . 29) (32 . 30)) 4.908 {0/15:28} B:0 3.12555 [ 3.37544] ((3 . 7) (5 . 9) (6 . 10) (7 . 11) (9 . 13) (22 . 24) (23 . 26) (24 . 27)) 8.153 {0/20:28} B:0 SIMILARITY (1/min{score1}): 0.8388 [and 1/min{score2}: 0.7770] [4018, 6165]: Comparing 1ms9_A and 1v3e_A, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 33 (5 H + 28 S) secondary structure elements in 1v3e_A, of which 30 satisfy the size requirements. 3.53774 [ 3.55245] ((4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (11 . 11) (16 . 15) (19 . 17) (20 . 20) (22 . 23) (23 . 24) (24 . 25) (26 . 26) (27 . 27) (28 . 28) (29 . 29) (30 . 30) (31 . 31) (32 . 32)) 5.261 {37/105:190} B:0 3.26032 [ 3.27576] ((1 . 29) (4 . 30) (5 . 31) (6 . 32) (8 . 4) (9 . 5) (11 . 6) (13 . 7) (16 . 8) (19 . 9) (20 . 11) (22 . 17) (23 . 20) (24 . 21) (26 . 22) (27 . 23) (28 . 24) (29 . 25) (30 . 26) (31 . 27) (32 . 28)) 5.697 {37/114:210} B:1 1.39871 [ 1.53954] ((1 . 25) (4 . 26) (5 . 27) (6 . 28) (7 . 29) (8 . 30) (9 . 32) (11 . 31) (13 . 3) (16 . 4) (19 . 5) (20 . 6) (22 . 8) (23 . 9) (24 . 11) (26 . 16) (27 . 17) (28 . 20) (29 . 21) (30 . 22) (31 . 23) (32 . 24)) 5.916 {15/124:231} B:2 1.89729 [ 1.98671] ((2 . 7) (4 . 4) (5 . 5) (6 . 6) (8 . 8) (9 . 11) (11 . 9) (16 . 15) (19 . 17) (20 . 20) (22 . 22) (23 . 23) (24 . 24) (26 . 26) (27 . 27) (28 . 28) (29 . 29) (30 . 30) (31 . 31) (32 . 32)) 5.939 {18/100:190} B:2 2.15296 [ 2.19647] ((1 . 25) (4 . 26) (5 . 27) (6 . 28) (7 . 29) (8 . 30) (9 . 32) (11 . 31) (13 . 33) (16 . 4) (19 . 5) (20 . 6) (22 . 8) (23 . 9) (24 . 11) (26 . 16) (27 . 17) (28 . 20) (29 . 21) (30 . 22) (31 . 23) (32 . 24)) 6.030 {27/128:231} B:2 SIMILARITY (1/min{score1}): 0.7149 [and 1/min{score2}: 0.6495] [4018, 6533]: Comparing 1ms9_A and 2sli, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 61 (9 H + 52 S) secondary structure elements in 2sli, of which 33 satisfy the size requirements. 1.92317 [ 2.53850] ((16 . 43) (19 . 46) (20 . 47) (22 . 49) (23 . 50) (24 . 51) (26 . 53) (27 . 54) (28 . 55) (29 . 57) (30 . 58) (31 . 59) (32 . 60)) 3.624 {0/52:78} B:0 2.27283 [ 3.00005] ((11 . 40) (16 . 43) (19 . 46) (20 . 47) (22 . 49) (23 . 50) (24 . 51) (29 . 57) (30 . 58) (31 . 59) (32 . 60)) 4.258 {0/39:55} B:0 1.31757 [ 1.73762] ((4 . 53) (5 . 54) (6 . 55) (7 . 57) (8 . 58) (9 . 59) (11 . 60) (16 . 20) (19 . 21) (20 . 22) (22 . 25) (23 . 26) (24 . 40) (27 . 46) (28 . 47) (29 . 48) (30 . 49) (31 . 50) (32 . 51)) 5.711 {0/78:171} B:1 1.31862 [ 1.73807] ((4 . 43) (5 . 46) (6 . 47) (7 . 48) (8 . 49) (9 . 50) (11 . 51) (19 . 54) (20 . 55) (22 . 58) (23 . 59) (24 . 60) (26 . 20) (27 . 21) (28 . 22) (29 . 23) (30 . 25) (31 . 26) (32 . 40)) 6.416 {0/81:171} B:1 1.65902 [ 1.92312] ((1 . 40) (4 . 43) (5 . 46) (6 . 47) (7 . 48) (8 . 49) (9 . 50) (11 . 51) (19 . 54) (20 . 55) (22 . 58) (23 . 59) (24 . 60) (26 . 20) (27 . 21) (28 . 22) (29 . 23) (30 . 25) (31 . 26)) 6.417 {13/89:171} B:1 SIMILARITY (1/min{score1}): 0.7590 [and 1/min{score2}: 0.5755] [4018, 6598]: Comparing 1ms9_A and 3sil, based on their crossing files. There are 52 (7 H + 45 S) secondary structure elements in 1ms9_A, of which 25 satisfy the size requirements. There are 31 (4 H + 27 S) secondary structure elements in 3sil, of which 24 satisfy the size requirements. 1.13692 [ 1.09154] ((1 . 1) (4 . 3) (5 . 4) (6 . 5) (7 . 6) (8 . 7) (9 . 8) (11 . 10) (16 . 13) (19 . 16) (20 . 17) (22 . 20) (23 . 21) (24 . 22) (26 . 24) (27 . 25) (28 . 26) (29 . 27) (30 . 28) (31 . 29) (32 . 30) (33 . 31)) 3.828 {1/148:231} B:0 1.19073 [ 1.14314] ((1 . 1) (4 . 3) (5 . 4) (6 . 5) (7 . 6) (8 . 7) (9 . 8) (11 . 10) (16 . 13) (19 . 16) (20 . 17) (22 . 20) (23 . 21) (24 . 22) (26 . 24) (27 . 25) (28 . 26) (29 . 27) (30 . 28) (31 . 29) (32 . 30)) 3.256 {0/129:210} B:0 2.77784 [ 2.66674] ((8 . 3) (9 . 4) (20 . 10) (26 . 20) (27 . 21) (28 . 22) (30 . 24) (31 . 25) (32 . 26)) 4.351 {0/13:36} B:0 2.77791 [ 2.66681] ((8 . 3) (9 . 4) (11 . 5) (20 . 10) (26 . 20) (27 . 21) (28 . 22) (30 . 24) (31 . 25)) 5.188 {0/15:36} B:0 3.12503 [ 3.00004] ((8 . 3) (9 . 4) (23 . 16) (27 . 21) (28 . 22) (30 . 24) (31 . 25) (32 . 26)) 4.025 {0/5:28} B:0 SIMILARITY (1/min{score1}): 0.9187 [and 1/min{score2}: 0.9567] -------------------------------------------------------------------------------------------------------------------------