------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [409, 219]: Comparing 1bj7 and 1avg_I, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 11 (3 H + 8 S) secondary structure elements in 1avg_I, of which 8 satisfy the size requirements. 1.42919 [ 1.14407] ((5 . 4) (6 . 5) (7 . 6) (8 . 7) (9 . 8) (10 . 9) (11 . 10)) 4.665 {0/16:21} B:0 1.44410 [ 1.17251] ((5 . 3) (6 . 4) (7 . 5) (8 . 6) (9 . 7) (10 . 8) (11 . 9)) 10.480 {0/15:21} B:0 1.67456 [ 1.34860] ((5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10)) 9.912 {0/11:15} B:0 2.00023 [ 1.60046] ((3 . 5) (5 . 6) (6 . 7) (8 . 9) (9 . 10)) 4.707 {0/9:10} B:0 2.00036 [ 1.60070] ((6 . 3) (8 . 5) (9 . 6) (10 . 7) (11 . 8)) 5.241 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.6997 [and 1/min{score2}: 0.8741] [409, 360]: Comparing 1bj7 and 1beb_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 15 (5 H + 10 S) secondary structure elements in 1beb_A, of which 11 satisfy the size requirements. 1.00011 [ 1.10009] ((3 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 12) (12 . 13) (14 . 14)) 2.338 {0/34:45} B:0 1.67256 [ 1.83777] ((6 . 5) (7 . 6) (8 . 7) (9 . 8) (10 . 9) (11 . 10)) 9.210 {0/11:15} B:0 1.67372 [ 1.83864] ((5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 12)) 9.634 {0/11:15} B:0 2.00137 [ 2.20103] ((5 . 8) (6 . 9) (7 . 10) (8 . 12) (10 . 14)) 7.325 {0/6:10} B:0 2.50017 [ 2.75013] ((8 . 5) (9 . 6) (10 . 7) (11 . 8)) 5.129 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.9090] [409, 409]: Comparing 1bj7 and 1bj7, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. 1.00000 [ 1.00000] ((3 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (14 . 14)) 0.000 {0/37:45} B:0 1.67215 [ 1.67215] ((6 . 5) (7 . 6) (8 . 7) (9 . 8) (10 . 9) (11 . 10)) 9.044 {0/11:15} B:0 1.67215 [ 1.67215] ((5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11)) 9.044 {0/11:15} B:0 2.50020 [ 2.50020] ((5 . 8) (6 . 9) (7 . 10) (8 . 11)) 5.329 {0/3:6} B:0 2.50020 [ 2.50020] ((8 . 5) (9 . 6) (10 . 7) (11 . 8)) 5.329 {0/3:6} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [409, 662]: Comparing 1bj7 and 1crb, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 12 (2 H + 10 S) secondary structure elements in 1crb, of which 12 satisfy the size requirements. 1.25147 [ 1.50085] ((3 . 1) (5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11) (11 . 12)) 5.241 {0/20:28} B:0 1.44451 [ 1.72359] ((5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11)) 10.550 {0/14:21} B:0 1.66700 [ 2.00019] ((5 . 6) (7 . 8) (8 . 9) (9 . 10) (10 . 11) (11 . 12)) 4.479 {0/10:15} B:0 2.00157 [ 2.40091] ((6 . 8) (7 . 9) (8 . 10) (9 . 11) (10 . 12)) 7.583 {0/5:10} B:0 2.00189 [ 2.40109] ((6 . 4) (7 . 5) (8 . 6) (10 . 8) (11 . 9)) 7.932 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.8989 [and 1/min{score2}: 0.7496] [409, 984]: Comparing 1bj7 and 1dzk_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 15 (5 H + 10 S) secondary structure elements in 1dzk_A, of which 10 satisfy the size requirements. 1.00000 [ 1.00000] ((3 . 2) (5 . 4) (6 . 5) (7 . 6) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (14 . 14)) 0.976 {0/35:45} B:0 1.67179 [ 1.67179] ((6 . 4) (7 . 5) (8 . 6) (9 . 8) (10 . 9) (11 . 10)) 8.889 {0/10:15} B:0 1.67228 [ 1.67228] ((5 . 5) (6 . 6) (7 . 8) (8 . 9) (9 . 10) (10 . 11)) 9.096 {0/11:15} B:0 2.00096 [ 2.00096] ((5 . 6) (6 . 8) (8 . 10) (9 . 11) (11 . 14)) 6.692 {0/8:10} B:0 2.00302 [ 2.00302] ((5 . 2) (6 . 4) (7 . 5) (10 . 9) (11 . 10)) 8.922 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.9999] [409, 1044]: Comparing 1bj7 and 1e5p_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 15 (5 H + 10 S) secondary structure elements in 1e5p_A, of which 10 satisfy the size requirements. 1.00001 [ 1.00001] ((3 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (14 . 14)) 1.161 {0/37:45} B:0 1.11112 [ 1.11112] ((3 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (14 . 14)) 1.130 {0/30:36} B:0 1.67129 [ 1.67129] ((6 . 5) (7 . 6) (8 . 7) (9 . 8) (10 . 9) (11 . 10)) 8.665 {0/11:15} B:0 1.67215 [ 1.67215] ((5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11)) 9.044 {0/11:15} B:0 2.00186 [ 2.00186] ((8 . 5) (9 . 6) (10 . 7) (11 . 8) (14 . 10)) 7.907 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.9999] [409, 1234]: Comparing 1bj7 and 1epa_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 13 (4 H + 9 S) secondary structure elements in 1epa_A, of which 11 satisfy the size requirements. 1.00016 [ 1.10012] ((3 . 2) (5 . 3) (6 . 4) (7 . 5) (8 . 6) (9 . 7) (10 . 8) (11 . 9) (12 . 10) (14 . 12)) 2.542 {0/35:45} B:0 1.44514 [ 1.58394] ((5 . 2) (6 . 3) (7 . 4) (8 . 5) (9 . 6) (10 . 7) (11 . 8)) 10.654 {0/16:21} B:0 1.66852 [ 1.83473] ((6 . 2) (8 . 4) (9 . 5) (10 . 6) (11 . 7) (14 . 9)) 6.890 {0/12:15} B:0 2.00104 [ 2.20078] ((8 . 2) (9 . 3) (10 . 4) (11 . 5) (14 . 7)) 6.834 {0/8:10} B:0 2.00173 [ 2.20130] ((5 . 4) (6 . 5) (8 . 7) (9 . 8) (10 . 9)) 7.762 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.9998 [and 1/min{score2}: 0.9090] [409, 1845]: Comparing 1bj7 and 1gka_B, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 13 (2 H + 11 S) secondary structure elements in 1gka_B, of which 11 satisfy the size requirements. 1.11269 [ 1.22341] ((3 . 2) (5 . 3) (6 . 4) (7 . 6) (8 . 7) (9 . 8) (10 . 9) (11 . 10) (12 . 11)) 4.881 {0/28:36} B:0 1.25072 [ 1.37554] ((5 . 3) (6 . 4) (7 . 6) (8 . 7) (9 . 8) (10 . 9) (11 . 10) (12 . 11)) 4.386 {0/21:28} B:0 1.44464 [ 1.58356] ((5 . 2) (6 . 3) (7 . 4) (8 . 6) (9 . 7) (10 . 8) (11 . 9)) 10.571 {0/16:21} B:0 1.45659 [ 1.59267] ((3 . 3) (5 . 4) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10)) 12.186 {0/17:21} B:0 2.00284 [ 2.20213] ((6 . 7) (7 . 8) (8 . 9) (9 . 10) (12 . 11)) 8.789 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.8987 [and 1/min{score2}: 0.8174] [409, 2240]: Comparing 1bj7 and 1hms, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 13 (3 H + 10 S) secondary structure elements in 1hms, of which 12 satisfy the size requirements. 1.25077 [ 1.50044] ((5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (14 . 13)) 4.450 {0/20:28} B:0 1.25163 [ 1.50094] ((3 . 2) (5 . 7) (6 . 8) (7 . 9) (8 . 10) (9 . 11) (10 . 12) (11 . 13)) 5.377 {0/20:28} B:0 1.66702 [ 2.00020] ((5 . 7) (6 . 8) (8 . 10) (9 . 11) (10 . 12) (11 . 13)) 4.540 {0/10:15} B:0 1.67274 [ 2.00353] ((5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11)) 9.280 {0/10:15} B:0 1.67290 [ 2.00362] ((6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11) (11 . 12)) 9.339 {0/10:15} B:0 SIMILARITY (1/min{score1}): 0.8992 [and 1/min{score2}: 0.7497] [409, 2389]: Comparing 1bj7 and 1i4u_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 15 (4 H + 11 S) secondary structure elements in 1i4u_A, of which 14 satisfy the size requirements. 1.00034 [ 1.40012] ((3 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (14 . 14)) 3.078 {0/36:45} B:0 1.11120 [ 1.55559] ((5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (14 . 14)) 2.378 {0/29:36} B:0 1.67200 [ 2.33529] ((6 . 5) (7 . 6) (8 . 7) (9 . 8) (10 . 9) (11 . 10)) 8.982 {0/11:15} B:0 1.67226 [ 2.33538] ((5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11)) 9.087 {0/12:15} B:0 1.67783 [ 2.33743] ((5 . 3) (6 . 5) (7 . 6) (8 . 7) (10 . 9) (11 . 10)) 10.815 {0/11:15} B:0 SIMILARITY (1/min{score1}): 0.9997 [and 1/min{score2}: 0.7142] [409, 2471]: Comparing 1bj7 and 1ifc, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 12 (2 H + 10 S) secondary structure elements in 1ifc, of which 12 satisfy the size requirements. 1.44171 [ 1.72194] ((5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11)) 10.045 {0/15:21} B:0 1.66688 [ 2.00012] ((5 . 6) (6 . 7) (8 . 9) (9 . 10) (10 . 11) (11 . 12)) 4.010 {0/11:15} B:0 2.00149 [ 2.40086] ((6 . 8) (7 . 9) (8 . 10) (9 . 11) (10 . 12)) 7.480 {0/6:10} B:0 2.00200 [ 2.40116] ((6 . 4) (7 . 5) (8 . 6) (10 . 8) (11 . 9)) 8.050 {0/7:10} B:0 2.00374 [ 2.40217] ((3 . 4) (5 . 5) (6 . 6) (9 . 9) (10 . 10)) 9.421 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.8993 [and 1/min{score2}: 0.7497] [409, 3106]: Comparing 1bj7 and 1jzu_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 14 (5 H + 9 S) secondary structure elements in 1jzu_A, of which 9 satisfy the size requirements. 1.11146 [ 1.00047] ((3 . 2) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12)) 3.340 {0/27:36} B:0 1.25013 [ 1.12518] ((3 . 2) (5 . 5) (6 . 6) (7 . 7) (9 . 9) (10 . 10) (11 . 11) (12 . 12)) 2.881 {0/21:28} B:0 1.67238 [ 1.50782] ((5 . 2) (6 . 5) (7 . 6) (9 . 8) (10 . 9) (11 . 10)) 9.138 {0/10:15} B:0 2.00122 [ 1.80168] ((7 . 5) (8 . 6) (10 . 8) (11 . 9) (14 . 11)) 7.120 {0/8:10} B:0 2.00143 [ 1.80196] ((5 . 6) (6 . 7) (8 . 9) (9 . 10) (10 . 11)) 7.403 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.8997 [and 1/min{score2}: 0.9995] [409, 3383]: Comparing 1bj7 and 1koi_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 16 (5 H + 11 S) secondary structure elements in 1koi_A, of which 13 satisfy the size requirements. 1.11165 [ 1.44469] ((3 . 2) (5 . 4) (6 . 5) (7 . 6) (8 . 7) (9 . 10) (10 . 11) (11 . 12) (12 . 13)) 3.730 {0/29:36} B:0 1.66859 [ 2.16754] ((3 . 2) (5 . 4) (6 . 5) (7 . 6) (8 . 8) (12 . 13)) 6.957 {0/13:15} B:0 2.00072 [ 2.60033] ((5 . 6) (6 . 7) (10 . 11) (11 . 12) (12 . 13)) 6.238 {0/6:10} B:0 2.00087 [ 2.60040] ((7 . 4) (8 . 5) (9 . 6) (10 . 7) (14 . 12)) 6.533 {0/8:10} B:0 2.00100 [ 2.60046] ((3 . 5) (5 . 6) (7 . 10) (8 . 11) (9 . 12)) 6.771 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.8996 [and 1/min{score2}: 0.6922] [409, 3425]: Comparing 1bj7 and 1kt7_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 12 (3 H + 9 S) secondary structure elements in 1kt7_A, of which 9 satisfy the size requirements. 1.11141 [ 1.00041] ((3 . 3) (5 . 4) (6 . 5) (7 . 6) (8 . 7) (9 . 8) (10 . 9) (11 . 10) (12 . 11)) 3.219 {0/29:36} B:0 2.00224 [ 1.80307] ((5 . 3) (6 . 4) (7 . 5) (8 . 6) (9 . 7)) 8.284 {0/7:10} B:0 2.50018 [ 2.25024] ((9 . 3) (10 . 4) (11 . 5) (14 . 7)) 5.176 {0/4:6} B:0 2.50022 [ 2.25031] ((9 . 4) (10 . 5) (11 . 6) (14 . 8)) 5.501 {0/4:6} B:0 2.50097 [ 2.25133] ((5 . 6) (6 . 7) (7 . 8) (12 . 11)) 7.945 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.8998 [and 1/min{score2}: 0.9996] [409, 3468]: Comparing 1bj7 and 1kxo_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 15 (5 H + 10 S) secondary structure elements in 1kxo_A, of which 10 satisfy the size requirements. 1.11203 [ 1.11203] ((3 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 9) (9 . 10) (10 . 11) (11 . 12) (12 . 13)) 4.265 {0/29:36} B:0 1.25026 [ 1.25026] ((5 . 5) (6 . 6) (7 . 7) (8 . 9) (9 . 10) (10 . 11) (11 . 12) (12 . 13)) 3.406 {0/22:28} B:0 1.66979 [ 1.66979] ((5 . 7) (6 . 9) (7 . 10) (8 . 11) (9 . 12) (12 . 13)) 7.852 {0/10:15} B:0 1.67344 [ 1.67344] ((5 . 6) (6 . 7) (7 . 9) (8 . 10) (9 . 11) (10 . 12)) 9.538 {0/12:15} B:0 1.67374 [ 1.67374] ((5 . 3) (6 . 5) (7 . 6) (8 . 7) (9 . 9) (10 . 10)) 9.639 {0/11:15} B:0 SIMILARITY (1/min{score1}): 0.8993 [and 1/min{score2}: 0.8993] [409, 3548]: Comparing 1bj7 and 1l6m_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 13 (4 H + 9 S) secondary structure elements in 1l6m_A, of which 10 satisfy the size requirements. 1.11131 [ 1.11131] ((3 . 2) (5 . 3) (6 . 4) (7 . 5) (8 . 6) (9 . 8) (10 . 9) (11 . 10) (12 . 11)) 2.912 {0/28:36} B:0 1.67248 [ 1.67248] ((6 . 3) (7 . 4) (8 . 5) (9 . 6) (10 . 8) (11 . 9)) 9.176 {0/11:15} B:0 1.67292 [ 1.67292] ((5 . 2) (6 . 3) (7 . 4) (9 . 6) (10 . 8) (11 . 9)) 9.347 {0/11:15} B:0 2.00052 [ 2.00052] ((3 . 4) (6 . 6) (7 . 8) (8 . 9) (9 . 10)) 5.741 {0/7:10} B:0 2.00136 [ 2.00136] ((7 . 3) (8 . 4) (10 . 6) (11 . 8) (14 . 10)) 7.314 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.8998 [and 1/min{score2}: 0.8998] [409, 3614]: Comparing 1bj7 and 1lf7_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 15 (5 H + 10 S) secondary structure elements in 1lf7_A, of which 11 satisfy the size requirements. 1.00019 [ 1.10014] ((3 . 3) (5 . 4) (6 . 5) (7 . 6) (8 . 7) (9 . 8) (10 . 9) (11 . 10) (12 . 11) (14 . 13)) 2.643 {0/37:45} B:0 1.66840 [ 1.83464] ((6 . 3) (7 . 4) (8 . 5) (9 . 6) (10 . 7) (11 . 8)) 6.776 {0/10:15} B:0 1.67134 [ 1.83685] ((6 . 3) (7 . 4) (8 . 5) (10 . 7) (11 . 8) (12 . 11)) 8.685 {0/10:15} B:0 1.67285 [ 1.83799] ((5 . 3) (6 . 4) (7 . 5) (9 . 7) (10 . 8) (11 . 9)) 9.322 {0/11:15} B:0 2.00155 [ 2.20117] ((8 . 3) (9 . 4) (10 . 5) (11 . 6) (14 . 8)) 7.558 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.9998 [and 1/min{score2}: 0.9090] [409, 3618]: Comparing 1bj7 and 1lfo, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 13 (2 H + 11 S) secondary structure elements in 1lfo, of which 13 satisfy the size requirements. 1.25130 [ 1.62559] ((3 . 1) (5 . 6) (6 . 7) (7 . 8) (8 . 10) (9 . 11) (10 . 12) (11 . 13)) 5.080 {0/20:28} B:0 2.00040 [ 2.60018] ((3 . 1) (8 . 7) (10 . 10) (11 . 11) (14 . 13)) 5.391 {0/6:10} B:0 2.00075 [ 2.60034] ((6 . 1) (9 . 4) (10 . 5) (11 . 6) (14 . 11)) 6.306 {0/7:10} B:0 2.00171 [ 2.60078] ((5 . 7) (6 . 8) (8 . 11) (9 . 12) (10 . 13)) 7.739 {0/6:10} B:0 2.00191 [ 2.60087] ((7 . 7) (8 . 8) (9 . 10) (10 . 11) (11 . 12)) 7.956 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.8994 [and 1/min{score2}: 0.6922] [409, 3910]: Comparing 1bj7 and 1mdc, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 12 (2 H + 10 S) secondary structure elements in 1mdc, of which 12 satisfy the size requirements. 1.25118 [ 1.50068] ((3 . 1) (5 . 4) (6 . 5) (7 . 6) (9 . 8) (10 . 9) (11 . 10) (14 . 12)) 4.956 {0/22:28} B:0 1.66797 [ 2.00076] ((3 . 5) (5 . 8) (6 . 9) (7 . 10) (8 . 11) (9 . 12)) 6.312 {0/11:15} B:0 1.67198 [ 2.00309] ((6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11)) 8.974 {0/11:15} B:0 1.67226 [ 2.00324] ((5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10)) 9.088 {0/10:15} B:0 2.00009 [ 2.40005] ((5 . 6) (8 . 9) (9 . 10) (10 . 11) (11 . 12)) 3.692 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.8992 [and 1/min{score2}: 0.7497] [409, 4472]: Comparing 1bj7 and 1o1v_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 14 (2 H + 12 S) secondary structure elements in 1o1v_A, of which 12 satisfy the size requirements. 1.25151 [ 1.50088] ((3 . 1) (5 . 4) (6 . 6) (7 . 10) (8 . 11) (9 . 12) (10 . 13) (11 . 14)) 5.279 {0/21:28} B:0 2.00149 [ 2.40086] ((6 . 1) (9 . 4) (10 . 6) (11 . 7) (14 . 12)) 7.480 {0/7:10} B:0 2.00181 [ 2.40105] ((7 . 9) (8 . 10) (9 . 11) (10 . 12) (11 . 13)) 7.851 {0/7:10} B:0 2.00199 [ 2.40115] ((5 . 9) (6 . 10) (8 . 12) (9 . 13) (10 . 14)) 8.038 {0/7:10} B:0 2.50144 [ 3.00083] ((8 . 6) (9 . 7) (10 . 9) (14 . 14)) 8.767 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.8986 [and 1/min{score2}: 0.7494] [409, 4617]: Comparing 1bj7 and 1oej_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 17 (8 H + 9 S) secondary structure elements in 1oej_A, of which 15 satisfy the size requirements. 2.00057 [ 3.00017] ((6 . 4) (9 . 8) (10 . 9) (11 . 10) (14 . 13)) 5.877 {0/7:10} B:0 2.00089 [ 3.00026] ((3 . 9) (5 . 11) (6 . 12) (7 . 13) (8 . 14)) 6.574 {0/7:10} B:0 2.00346 [ 3.00103] ((3 . 8) (6 . 11) (7 . 12) (8 . 13) (9 . 14)) 9.235 {0/8:10} B:0 2.50052 [ 3.75015] ((3 . 11) (5 . 12) (6 . 13) (7 . 14)) 6.782 {0/3:6} B:0 2.50089 [ 3.75027] ((3 . 9) (7 . 13) (8 . 14) (12 . 17)) 7.782 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.5997 [and 1/min{score2}: 0.4315] [409, 4914]: Comparing 1bj7 and 1p6p_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 12 (2 H + 10 S) secondary structure elements in 1p6p_A, of which 12 satisfy the size requirements. 1.43000 [ 1.71512] ((5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11) (11 . 12)) 5.754 {0/12:21} B:0 1.66717 [ 2.00029] ((3 . 1) (5 . 4) (6 . 5) (7 . 6) (9 . 8) (10 . 9)) 4.979 {0/12:15} B:0 2.00039 [ 2.40023] ((3 . 5) (6 . 9) (7 . 10) (8 . 11) (9 . 12)) 5.356 {0/5:10} B:0 2.00041 [ 2.40023] ((3 . 1) (9 . 8) (10 . 9) (11 . 10) (14 . 12)) 5.401 {0/4:10} B:0 2.00072 [ 2.40041] ((6 . 1) (9 . 4) (10 . 5) (11 . 6) (14 . 10)) 6.225 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.9502 [and 1/min{score2}: 0.8120] [409, 5317]: Comparing 1bj7 and 1qft_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 16 (4 H + 12 S) secondary structure elements in 1qft_A, of which 11 satisfy the size requirements. 1.11138 [ 1.22243] ((3 . 3) (5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11) (11 . 12) (12 . 14)) 3.150 {0/29:36} B:0 1.67329 [ 1.83832] ((5 . 3) (6 . 6) (7 . 7) (9 . 9) (10 . 10) (11 . 11)) 9.482 {0/11:15} B:0 1.68336 [ 1.84593] ((3 . 6) (5 . 7) (7 . 9) (8 . 10) (9 . 11) (10 . 12)) 11.975 {0/13:15} B:0 2.00068 [ 2.20051] ((6 . 3) (9 . 6) (10 . 7) (11 . 8) (14 . 10)) 6.157 {0/8:10} B:0 2.50021 [ 2.75016] ((9 . 6) (10 . 7) (11 . 8) (14 . 10)) 5.425 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.8998 [and 1/min{score2}: 0.8180] [409, 5474]: Comparing 1bj7 and 1qwd_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 15 (4 H + 11 S) secondary structure elements in 1qwd_A, of which 12 satisfy the size requirements. 1.11189 [ 1.33379] ((3 . 4) (5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11) (11 . 12) (12 . 13)) 4.095 {0/29:36} B:0 1.25027 [ 1.50016] ((5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11) (11 . 12) (12 . 13)) 3.429 {0/22:28} B:0 1.67292 [ 2.00363] ((5 . 4) (6 . 6) (7 . 7) (9 . 9) (10 . 10) (11 . 11)) 9.346 {0/11:15} B:0 1.67575 [ 2.00528] ((5 . 7) (6 . 8) (7 . 9) (8 . 10) (9 . 11) (10 . 12)) 10.267 {0/12:15} B:0 2.00011 [ 2.40006] ((3 . 7) (6 . 9) (7 . 10) (8 . 11) (9 . 12)) 3.879 {0/8:10} B:0 SIMILARITY (1/min{score1}): 0.8994 [and 1/min{score2}: 0.7497] [409, 5491]: Comparing 1bj7 and 1qy1_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 14 (4 H + 10 S) secondary structure elements in 1qy1_A, of which 10 satisfy the size requirements. 1.00003 [ 1.00003] ((3 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (12 . 12) (14 . 14)) 1.637 {0/36:45} B:0 1.11112 [ 1.11112] ((3 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (14 . 14)) 1.408 {0/30:36} B:0 1.67199 [ 1.67199] ((6 . 5) (7 . 6) (8 . 7) (9 . 8) (10 . 9) (11 . 10)) 8.975 {0/11:15} B:0 1.67270 [ 1.67270] ((5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11)) 9.264 {0/11:15} B:0 2.00290 [ 2.00290] ((3 . 5) (5 . 6) (6 . 7) (9 . 10) (10 . 11)) 8.839 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.9999] [409, 5513]: Comparing 1bj7 and 1r0u_A, based on their crossing files. There are 15 (5 H + 10 S) secondary structure elements in 1bj7, of which 10 satisfy the size requirements. There are 14 (1 H + 13 S) secondary structure elements in 1r0u_A, of which 13 satisfy the size requirements. 1.66940 [ 2.16791] ((5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11)) 7.594 {0/5:15} B:0 1.67662 [ 2.17122] ((3 . 4) (5 . 6) (6 . 7) (7 . 8) (10 . 12) (11 . 13)) 10.507 {0/10:15} B:0 2.00033 [ 2.60015] ((5 . 7) (6 . 8) (7 . 9) (10 . 13) (11 . 14)) 5.131 {0/6:10} B:0 2.00035 [ 2.60016] ((5 . 7) (6 . 8) (9 . 12) (10 . 13) (11 . 14)) 5.223 {0/6:10} B:0 2.00063 [ 2.60029] ((5 . 5) (6 . 6) (7 . 7) (8 . 8) (11 . 12)) 6.034 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.8990 [and 1/min{score2}: 0.6920] -------------------------------------------------------------------------------------------------------------------------