------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 709 1cyx ) ( 94 1aac ) 0.4286 0.9999 2.3498 ( 0 5 15) 0 0.4286 0.9999 14 6 ( 709 1cyx ) ( 177 1aoz_A) 0.5661 0.8451 4.8595 ( 1 13 28) 0 0.5661 0.8451 14 9 ( 709 1cyx ) ( 178 1aoz_A) 0.3571 0.3571 7.7557 ( 0 7 10) 0 0.5501 0.5501 14 14 ( 709 1cyx ) ( 179 1aoz_A) 0.4286 0.3750 3.7667 ( 0 3 15) 0 0.4286 0.3750 14 16 ( 709 1cyx ) ( 337 1baw_A) 0.5714 0.8888 2.5985 ( 0 11 28) 0 0.5714 0.8888 14 9 ( 709 1cyx ) ( 448 1bqk ) 0.5000 0.6999 3.5218 ( 0 8 21) 0 0.5000 0.6999 14 10 ( 709 1cyx ) ( 709 1cyx ) 1.0000 1.0000 0.0000 ( 0 71 91) 0 1.0000 1.0000 14 14 ( 709 1cyx ) ( 1010 1e30_A) 0.3571 0.3846 2.9319 ( 0 6 10) 0 0.4716 0.4991 14 13 ( 709 1cyx ) ( 1644 1fwx_A) 0.3571 0.4999 5.9493 ( 0 3 10) 0 0.5000 0.6998 14 10 ( 709 1cyx ) ( 1935 1gsk_A) 0.5082 0.5936 4.8596 ( 2 13 28) 0 0.5640 0.7635 14 10 ( 709 1cyx ) ( 1936 1gsk_A) 0.3571 0.4166 4.8479 ( 0 4 10) 0 0.4840 0.5038 14 12 ( 709 1cyx ) ( 1937 1gsk_A) 0.3571 0.4545 3.1224 ( 0 5 10) 0 0.4710 0.5124 14 11 ( 709 1cyx ) ( 1980 1gw0_A) 0.5641 0.7638 5.4882 ( 1 12 28) 0 0.5641 0.7638 14 10 ( 709 1cyx ) ( 1981 1gw0_A) 0.4284 0.4995 7.9367 ( 0 9 15) 0 0.4284 0.4995 14 12 ( 709 1cyx ) ( 1982 1gw0_A) 0.6395 0.5976 3.7636 ( 1 17 36) 0 0.6395 0.5976 14 15 ( 709 1cyx ) ( 2204 1hfu_A) 0.5713 0.8880 4.4900 ( 0 11 28) 0 0.5713 0.8880 14 9 ( 709 1cyx ) ( 2205 1hfu_A) 0.4285 0.4285 6.6791 ( 0 8 15) 0 0.4452 0.4452 14 14 ( 709 1cyx ) ( 2206 1hfu_A) 0.3571 0.3333 4.3232 ( 0 2 10) 0 0.3571 0.3333 14 15 ( 709 1cyx ) ( 2455 1iby_A) 0.6383 0.8032 5.8790 ( 1 16 36) 0 0.6383 0.8032 14 11 ( 709 1cyx ) ( 2522 1iko_P) 0.5000 0.6999 3.3695 ( 0 5 21) 0 0.5000 0.6999 14 10 ( 709 1cyx ) ( 2840 1jer ) 0.4286 0.5999 4.0057 ( 0 5 15) 0 0.4286 0.5999 14 10 ( 709 1cyx ) ( 3103 1jzg_A) 0.5000 0.6999 3.8447 ( 0 8 21) 0 0.5000 0.6999 14 10 ( 709 1cyx ) ( 3255 1kbv_A) 0.2857 0.3636 5.5893 ( 0 3 6) 0 0.4998 0.6358 14 11 ( 709 1cyx ) ( 3256 1kbv_A) 0.6402 0.6884 4.0099 ( 1 18 36) 0 0.6402 0.6884 14 13 ( 709 1cyx ) ( 3264 1kcw ) 0.5000 0.6363 2.7408 ( 0 10 21) 0 0.5000 0.6363 14 11 ( 709 1cyx ) ( 3265 1kcw ) 0.6355 0.6817 5.6995 ( 1 14 36) 0 0.6355 0.6817 14 13 ( 709 1cyx ) ( 3266 1kcw ) 0.5674 0.7140 5.3267 ( 1 14 28) 0 0.5674 0.7140 14 11 ( 709 1cyx ) ( 3267 1kcw ) 0.4924 0.6631 4.8960 ( 1 10 21) 0 0.4924 0.6631 14 10 ( 709 1cyx ) ( 3272 1kdj ) 0.4286 0.7500 2.4245 ( 0 4 15) 0 0.4286 0.7500 14 8 ( 709 1cyx ) ( 3447 1kv7_A) 0.5209 0.6230 6.8617 ( 2 14 28) 0 0.5209 0.6997 14 10 ( 709 1cyx ) ( 3448 1kv7_A) 0.4285 0.4614 6.6673 ( 0 8 15) 0 0.5392 0.5708 14 13 ( 709 1cyx ) ( 3449 1kv7_A) 0.3571 0.4166 4.4988 ( 0 2 10) 0 0.5614 0.6458 14 12 ( 709 1cyx ) ( 3489 1kzq_A) 0.5000 0.9993 3.6214 ( 0 5 21) 0 0.5000 0.9993 14 7 ( 709 1cyx ) ( 3490 1kzq_A) 0.3571 0.4545 4.3182 ( 0 0 10) 0 0.6374 0.8006 14 11 ( 709 1cyx ) ( 4610 1oe1_A) 0.4886 0.6470 5.6774 ( 1 9 21) 0 0.4886 0.6470 14 10 ( 709 1cyx ) ( 4611 1oe1_A) 0.6427 0.7496 4.6671 ( 0 17 36) 0 0.6427 0.7496 14 12 ( 709 1cyx ) ( 5046 1plc ) 0.4286 0.8571 2.3415 ( 0 4 15) 0 0.4286 0.8571 14 7 ( 709 1cyx ) ( 5344 1qhq_A) 0.3571 0.5000 4.2653 ( 0 5 10) 0 0.3873 0.5000 14 10 ( 709 1cyx ) ( 6173 1v54_B) 0.7853 0.9158 1.4894 ( 1 37 55) 0 0.7853 0.9158 14 12 ( 709 1cyx ) ( 6418 2cbp ) 0.5000 0.6998 3.9256 ( 0 9 21) 0 0.5000 0.6998 14 10 ( 709 1cyx ) ( 6424 2cua_A) 0.6428 0.8999 2.7748 ( 0 21 36) 0 0.6428 0.8999 14 10 -------------------------------------------------------------------------------------------------------------------------