------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [1981, 94]: Comparing 1gw0_A and 1aac, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 12 (1 H + 11 S) secondary structure elements in 1aac, of which 6 satisfy the size requirements. 3.00001 [ 1.50011] ((17 . 4) (22 . 10) (23 . 11) (24 . 12)) 3.140 {0/1:6} B:0 3.00007 [ 1.50054] ((21 . 4) (22 . 6) (23 . 7) (24 . 10)) 4.679 {0/2:6} B:0 3.00035 [ 1.50280] ((17 . 7) (20 . 10) (21 . 11) (22 . 12)) 7.058 {0/1:6} B:0 6.73399 [ 6.67095] ((16 . 4) (22 . 10) (23 . 11) (24 . 12)) 5.452 {2/3:6} B:0 6.73411 [ 6.67106] ((15 . 4) (20 . 10) (21 . 11) (22 . 12)) 10.024 {2/3:6} B:0 SIMILARITY (1/min{score1}): 0.4999 [and 1/min{score2}: 0.9974] [1981, 177]: Comparing 1gw0_A and 1aoz_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 43 (11 H + 32 S) secondary structure elements in 1aoz_A, of which 9 satisfy the size requirements. 1.50007 [ 1.12516] ((13 . 1) (15 . 2) (16 . 3) (17 . 4) (18 . 5) (22 . 7) (23 . 8) (24 . 10)) 2.777 {0/12:28} B:0 3.00021 [ 2.25049] ((13 . 1) (15 . 2) (20 . 7) (21 . 8)) 6.191 {0/4:6} B:0 3.00029 [ 2.25068] ((18 . 1) (21 . 3) (22 . 4) (23 . 5)) 6.724 {0/1:6} B:0 3.00044 [ 2.25105] ((13 . 4) (16 . 7) (17 . 8) (18 . 10)) 7.487 {0/1:6} B:0 3.00047 [ 2.25112] ((17 . 5) (21 . 7) (22 . 8) (23 . 10)) 7.601 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.8888] [1981, 178]: Comparing 1gw0_A and 1aoz_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 43 (11 H + 32 S) secondary structure elements in 1aoz_A, of which 14 satisfy the size requirements. 1.00003 [ 1.16668] ((13 . 11) (14 . 12) (15 . 13) (16 . 15) (17 . 16) (18 . 17) (19 . 18) (20 . 19) (21 . 20) (22 . 21) (23 . 22) (24 . 23)) 1.617 {0/48:66} B:0 2.40022 [ 2.80014] ((13 . 11) (14 . 12) (15 . 13) (17 . 15) (24 . 23)) 5.326 {0/6:10} B:0 2.40195 [ 2.80123] ((13 . 13) (17 . 17) (20 . 20) (22 . 22) (23 . 23)) 9.169 {0/6:10} B:0 2.40200 [ 2.80126] ((13 . 13) (16 . 16) (17 . 17) (22 . 22) (23 . 23)) 9.234 {0/2:10} B:0 2.42753 [ 2.81748] ((13 . 11) (14 . 12) (15 . 13) (21 . 18) (23 . 20)) 6.347 {1/9:10} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.8571] [1981, 179]: Comparing 1gw0_A and 1aoz_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 43 (11 H + 32 S) secondary structure elements in 1aoz_A, of which 16 satisfy the size requirements. 1.20010 [ 1.60004] ((13 . 25) (15 . 26) (16 . 30) (17 . 31) (18 . 32) (19 . 33) (21 . 36) (22 . 37) (23 . 38) (24 . 40)) 2.594 {0/24:45} B:0 2.40033 [ 3.20014] ((18 . 33) (21 . 36) (22 . 37) (23 . 38) (24 . 40)) 5.859 {0/2:10} B:0 2.40055 [ 3.20023] ((15 . 30) (21 . 36) (22 . 37) (23 . 38) (24 . 40)) 6.679 {0/5:10} B:0 2.40338 [ 3.20143] ((13 . 25) (15 . 26) (20 . 30) (22 . 32) (23 . 33)) 10.528 {0/6:10} B:0 3.00011 [ 4.00005] ((16 . 36) (17 . 37) (18 . 38) (19 . 40)) 5.260 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.8333 [and 1/min{score2}: 0.6250] [1981, 337]: Comparing 1gw0_A and 1baw_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 11 (2 H + 9 S) secondary structure elements in 1baw_A, of which 9 satisfy the size requirements. 1.50006 [ 1.12514] ((13 . 1) (16 . 3) (17 . 4) (18 . 5) (21 . 8) (22 . 9) (23 . 10) (24 . 11)) 2.682 {0/10:28} B:0 1.50041 [ 1.12598] ((13 . 1) (16 . 3) (17 . 4) (18 . 5) (19 . 8) (22 . 9) (23 . 10) (24 . 11)) 4.374 {0/10:28} B:0 2.40118 [ 1.80278] ((16 . 1) (17 . 3) (18 . 4) (22 . 8) (23 . 9)) 8.080 {0/2:10} B:0 3.00001 [ 2.25003] ((21 . 3) (22 . 4) (23 . 5) (24 . 8)) 3.072 {0/3:6} B:0 3.00007 [ 2.25017] ((17 . 1) (18 . 3) (19 . 4) (20 . 5)) 4.756 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.8888] [1981, 448]: Comparing 1gw0_A and 1bqk, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 11 (3 H + 8 S) secondary structure elements in 1bqk, of which 10 satisfy the size requirements. 1.71432 [ 1.42862] ((13 . 1) (15 . 2) (16 . 3) (17 . 4) (22 . 6) (23 . 7) (24 . 9)) 2.526 {0/8:21} B:0 1.71465 [ 1.42921] ((13 . 1) (15 . 2) (16 . 3) (21 . 4) (22 . 6) (23 . 7) (24 . 9)) 4.697 {0/8:21} B:0 2.40063 [ 2.00108] ((17 . 1) (18 . 3) (22 . 6) (23 . 7) (24 . 9)) 6.904 {0/1:10} B:0 2.40074 [ 2.00127] ((17 . 3) (18 . 4) (21 . 6) (22 . 7) (23 . 9)) 7.193 {0/2:10} B:0 3.00026 [ 2.50045] ((17 . 3) (22 . 6) (23 . 7) (24 . 9)) 6.563 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.5833 [and 1/min{score2}: 0.7000] [1981, 709]: Comparing 1gw0_A and 1cyx, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 15 (4 H + 11 S) secondary structure elements in 1cyx, of which 14 satisfy the size requirements. 2.00189 [ 2.33452] ((16 . 3) (18 . 5) (19 . 6) (20 . 8) (22 . 10) (23 . 11)) 7.937 {0/9:15} B:0 2.40067 [ 2.80042] ((18 . 5) (19 . 6) (20 . 8) (21 . 9) (23 . 11)) 7.017 {0/4:10} B:0 2.40067 [ 2.80042] ((15 . 2) (16 . 4) (17 . 5) (18 . 6) (21 . 10)) 7.025 {0/6:10} B:0 2.40134 [ 2.80085] ((17 . 4) (18 . 5) (19 . 6) (21 . 9) (23 . 11)) 8.355 {0/4:10} B:0 2.40145 [ 2.80091] ((13 . 1) (17 . 8) (18 . 9) (19 . 10) (20 . 11)) 8.517 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.4995 [and 1/min{score2}: 0.4284] [1981, 1010]: Comparing 1gw0_A and 1e30_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 14 (1 H + 13 S) secondary structure elements in 1e30_A, of which 13 satisfy the size requirements. 1.50079 [ 1.62562] ((13 . 5) (16 . 8) (17 . 9) (18 . 10) (19 . 11) (22 . 12) (23 . 13) (24 . 14)) 5.141 {0/12:28} B:0 2.00012 [ 2.16676] ((16 . 8) (17 . 9) (18 . 10) (22 . 12) (23 . 13) (24 . 14)) 3.954 {0/3:15} B:0 2.40029 [ 2.60023] ((17 . 9) (21 . 11) (22 . 12) (23 . 13) (24 . 14)) 5.704 {0/3:10} B:0 3.00005 [ 3.25004] ((21 . 8) (22 . 9) (23 . 10) (24 . 11)) 4.312 {0/3:6} B:0 3.00010 [ 3.25008] ((15 . 5) (18 . 9) (19 . 10) (23 . 12)) 5.206 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6663 [and 1/min{score2}: 0.6151] [1981, 1644]: Comparing 1gw0_A and 1fwx_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 52 (10 H + 42 S) secondary structure elements in 1fwx_A, of which 10 satisfy the size requirements. 2.40053 [ 2.00092] ((18 . 47) (19 . 48) (20 . 49) (21 . 50) (23 . 52)) 6.625 {0/2:10} B:0 2.40137 [ 2.00236] ((17 . 46) (18 . 47) (19 . 48) (21 . 50) (23 . 52)) 8.390 {0/3:10} B:0 3.00002 [ 2.50003] ((19 . 49) (22 . 50) (23 . 51) (24 . 52)) 3.345 {0/2:6} B:0 3.00002 [ 2.50003] ((17 . 44) (19 . 47) (23 . 51) (24 . 52)) 3.403 {0/0:6} B:0 3.00003 [ 2.50005] ((16 . 46) (17 . 47) (18 . 48) (19 . 49)) 3.697 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.7484 [and 1/min{score2}: 0.8961] [1981, 1935]: Comparing 1gw0_A and 1gsk_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 41 (10 H + 31 S) secondary structure elements in 1gsk_A, of which 10 satisfy the size requirements. 1.53461 [ 1.30778] ((13 . 2) (15 . 3) (16 . 4) (17 . 5) (18 . 6) (22 . 9) (23 . 10) (24 . 12)) 3.096 {1/12:28} B:0 2.00122 [ 1.66878] ((13 . 2) (15 . 4) (18 . 6) (22 . 9) (23 . 10) (24 . 12)) 7.117 {0/7:15} B:0 2.40336 [ 2.00579] ((15 . 2) (18 . 5) (21 . 6) (23 . 9) (24 . 10)) 10.508 {0/5:10} B:0 3.00011 [ 2.50019] ((13 . 2) (16 . 4) (17 . 5) (20 . 6)) 5.251 {0/3:6} B:0 3.00030 [ 2.50052] ((17 . 6) (21 . 9) (22 . 10) (23 . 12)) 6.810 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.6516 [and 1/min{score2}: 0.7647] [1981, 1936]: Comparing 1gw0_A and 1gsk_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 41 (10 H + 31 S) secondary structure elements in 1gsk_A, of which 12 satisfy the size requirements. 1.09097 [ 1.09097] ((13 . 15) (15 . 17) (16 . 19) (17 . 20) (18 . 21) (19 . 22) (20 . 23) (21 . 24) (22 . 25) (23 . 27) (24 . 28)) 2.113 {0/37:55} B:0 2.40033 [ 2.40033] ((13 . 15) (16 . 17) (17 . 20) (18 . 21) (24 . 28)) 5.877 {0/2:10} B:0 2.40090 [ 2.40090] ((17 . 19) (18 . 20) (19 . 21) (22 . 24) (23 . 25)) 7.566 {0/1:10} B:0 3.00013 [ 3.00013] ((20 . 19) (21 . 20) (22 . 21) (23 . 22)) 5.548 {0/3:6} B:0 3.00028 [ 3.00028] ((16 . 23) (18 . 25) (19 . 27) (22 . 28)) 6.701 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.9166 [and 1/min{score2}: 0.9166] [1981, 1937]: Comparing 1gw0_A and 1gsk_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 41 (10 H + 31 S) secondary structure elements in 1gsk_A, of which 11 satisfy the size requirements. 1.33340 [ 1.22230] ((13 . 30) (15 . 31) (17 . 32) (18 . 33) (19 . 34) (21 . 37) (22 . 38) (23 . 39) (24 . 41)) 2.490 {0/19:36} B:0 2.00018 [ 1.83357] ((13 . 30) (17 . 34) (21 . 37) (22 . 38) (23 . 39) (24 . 41)) 4.399 {0/6:15} B:0 2.00021 [ 1.83360] ((13 . 30) (15 . 31) (17 . 32) (18 . 33) (19 . 34) (23 . 37)) 4.555 {0/8:15} B:0 2.40068 [ 2.20089] ((16 . 31) (17 . 32) (18 . 33) (19 . 34) (23 . 37)) 7.051 {0/5:10} B:0 2.40077 [ 2.20099] ((17 . 33) (18 . 34) (22 . 37) (23 . 38) (24 . 39)) 7.259 {0/1:10} B:0 SIMILARITY (1/min{score1}): 0.7500 [and 1/min{score2}: 0.8181] [1981, 1980]: Comparing 1gw0_A and 1gw0_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 10 satisfy the size requirements. 1.50019 [ 1.25032] ((13 . 3) (15 . 4) (16 . 5) (17 . 6) (18 . 7) (22 . 9) (23 . 10) (24 . 12)) 3.592 {0/11:28} B:0 1.71434 [ 1.42866] ((13 . 3) (16 . 5) (17 . 6) (18 . 7) (22 . 9) (23 . 10) (24 . 12)) 2.857 {0/6:21} B:0 2.40237 [ 2.00409] ((15 . 3) (17 . 5) (18 . 6) (19 . 7) (23 . 9)) 9.629 {0/5:10} B:0 2.40259 [ 2.00447] ((19 . 3) (20 . 4) (22 . 5) (23 . 6) (24 . 7)) 9.846 {0/5:10} B:0 3.00041 [ 2.50070] ((18 . 3) (21 . 5) (22 . 6) (23 . 7)) 7.318 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.7998] [1981, 1981]: Comparing 1gw0_A and 1gw0_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. 1.00000 [ 1.00000] ((13 . 13) (14 . 14) (15 . 15) (16 . 16) (17 . 17) (18 . 18) (19 . 19) (20 . 20) (21 . 21) (22 . 22) (23 . 23) (24 . 24)) 0.000 {0/49:66} B:0 2.40147 [ 2.40147] ((17 . 18) (18 . 19) (21 . 22) (22 . 23) (23 . 24)) 8.546 {0/2:10} B:0 3.00024 [ 3.00024] ((16 . 17) (17 . 18) (18 . 19) (22 . 23)) 6.449 {0/1:6} B:0 3.00024 [ 3.00024] ((17 . 16) (18 . 17) (19 . 18) (23 . 22)) 6.449 {0/1:6} B:0 3.00035 [ 3.00035] ((16 . 20) (18 . 22) (19 . 23) (22 . 24)) 7.045 {0/3:6} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [1981, 1982]: Comparing 1gw0_A and 1gw0_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 15 satisfy the size requirements. 1.20008 [ 1.50004] ((13 . 26) (15 . 27) (16 . 30) (17 . 31) (18 . 32) (19 . 33) (21 . 36) (22 . 37) (23 . 38) (24 . 40)) 2.468 {0/25:45} B:0 2.00046 [ 2.50023] ((13 . 26) (16 . 30) (17 . 31) (18 . 32) (19 . 33) (23 . 36)) 5.566 {0/8:15} B:0 2.40007 [ 3.00003] ((17 . 33) (21 . 36) (22 . 37) (23 . 38) (24 . 40)) 3.943 {0/2:10} B:0 2.40022 [ 3.00011] ((13 . 26) (15 . 27) (16 . 30) (17 . 31) (23 . 36)) 5.310 {0/4:10} B:0 2.40130 [ 3.00066] ((13 . 32) (15 . 33) (16 . 36) (17 . 37) (18 . 38)) 8.280 {0/2:10} B:0 SIMILARITY (1/min{score1}): 0.8333 [and 1/min{score2}: 0.6666] [1981, 2204]: Comparing 1gw0_A and 1hfu_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 45 (13 H + 32 S) secondary structure elements in 1hfu_A, of which 9 satisfy the size requirements. 1.50010 [ 1.12524] ((13 . 2) (15 . 3) (16 . 4) (17 . 5) (18 . 6) (22 . 8) (23 . 9) (24 . 11)) 3.071 {0/10:28} B:0 2.40156 [ 1.80370] ((15 . 2) (17 . 4) (18 . 5) (19 . 6) (23 . 8)) 8.678 {0/5:10} B:0 2.40258 [ 1.80609] ((15 . 2) (17 . 4) (18 . 5) (23 . 8) (24 . 9)) 9.833 {0/3:10} B:0 3.00005 [ 2.25011] ((18 . 4) (19 . 5) (20 . 8) (21 . 9)) 4.264 {0/2:6} B:0 3.00020 [ 2.25048] ((19 . 2) (20 . 3) (23 . 5) (24 . 6)) 6.153 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.8887] [1981, 2205]: Comparing 1gw0_A and 1hfu_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 45 (13 H + 32 S) secondary structure elements in 1hfu_A, of which 14 satisfy the size requirements. 1.09198 [ 1.27340] ((13 . 13) (15 . 15) (16 . 16) (17 . 17) (18 . 18) (19 . 19) (20 . 20) (21 . 21) (22 . 22) (23 . 23) (24 . 26)) 1.934 {1/37:55} B:0 2.40077 [ 2.80049] ((16 . 20) (17 . 21) (18 . 22) (19 . 23) (22 . 26)) 7.273 {0/4:10} B:0 2.40220 [ 2.80138] ((15 . 13) (17 . 16) (18 . 17) (23 . 22) (24 . 23)) 9.448 {0/2:10} B:0 2.64845 [ 2.96694] ((17 . 18) (20 . 21) (21 . 22) (22 . 23) (23 . 26)) 6.215 {1/5:10} B:0 2.64881 [ 2.96720] ((18 . 17) (19 . 18) (21 . 20) (22 . 21) (24 . 23)) 7.541 {1/5:10} B:0 SIMILARITY (1/min{score1}): 0.9158 [and 1/min{score2}: 0.7853] [1981, 2206]: Comparing 1gw0_A and 1hfu_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 45 (13 H + 32 S) secondary structure elements in 1hfu_A, of which 15 satisfy the size requirements. 1.33350 [ 1.66675] ((13 . 28) (16 . 33) (17 . 34) (18 . 35) (19 . 36) (21 . 38) (22 . 39) (23 . 40) (24 . 42)) 3.169 {0/18:36} B:0 2.40076 [ 3.00039] ((16 . 28) (21 . 33) (22 . 34) (23 . 35) (24 . 38)) 7.251 {0/4:10} B:0 2.40084 [ 3.00043] ((17 . 33) (18 . 34) (19 . 35) (22 . 38) (23 . 39)) 7.425 {0/1:10} B:0 2.40190 [ 3.00097] ((13 . 30) (17 . 35) (20 . 38) (21 . 39) (23 . 42)) 9.108 {0/4:10} B:0 3.00009 [ 3.75005] ((16 . 38) (17 . 39) (18 . 40) (19 . 42)) 5.055 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.7499 [and 1/min{score2}: 0.6000] [1981, 2455]: Comparing 1gw0_A and 1iby_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 12 (1 H + 11 S) secondary structure elements in 1iby_A, of which 11 satisfy the size requirements. 1.33414 [ 1.22326] ((13 . 1) (15 . 4) (16 . 5) (17 . 6) (18 . 7) (21 . 9) (22 . 10) (23 . 11) (24 . 12)) 4.727 {0/16:36} B:0 2.40050 [ 2.20065] ((18 . 5) (19 . 6) (22 . 10) (23 . 11) (24 . 12)) 6.516 {0/1:10} B:0 2.40092 [ 2.20120] ((13 . 1) (16 . 4) (18 . 7) (19 . 9) (20 . 10)) 7.603 {0/6:10} B:0 2.40249 [ 2.20323] ((15 . 1) (17 . 5) (18 . 6) (21 . 10) (22 . 11)) 9.746 {0/4:10} B:0 3.00027 [ 2.75035] ((15 . 7) (16 . 10) (17 . 11) (18 . 12)) 6.608 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.7495 [and 1/min{score2}: 0.8175] [1981, 2522]: Comparing 1gw0_A and 1iko_P, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 11 (3 H + 8 S) secondary structure elements in 1iko_P, of which 10 satisfy the size requirements. 1.71434 [ 1.42866] ((16 . 2) (17 . 3) (18 . 4) (21 . 6) (22 . 7) (23 . 8) (24 . 11)) 2.868 {0/4:21} B:0 1.71455 [ 1.42904] ((15 . 2) (17 . 3) (18 . 4) (21 . 6) (22 . 7) (23 . 8) (24 . 11)) 4.343 {0/4:21} B:0 1.71484 [ 1.42952] ((15 . 2) (17 . 3) (18 . 4) (19 . 6) (22 . 7) (23 . 8) (24 . 11)) 5.191 {0/4:21} B:0 2.00004 [ 1.66674] ((16 . 2) (17 . 3) (18 . 4) (21 . 6) (22 . 7) (23 . 8)) 3.037 {0/4:15} B:0 3.00003 [ 2.50006] ((21 . 2) (22 . 3) (23 . 4) (24 . 6)) 3.939 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.5833 [and 1/min{score2}: 0.7000] [1981, 2840]: Comparing 1gw0_A and 1jer, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 11 (4 H + 7 S) secondary structure elements in 1jer, of which 10 satisfy the size requirements. 2.40217 [ 2.00375] ((13 . 1) (16 . 6) (18 . 8) (19 . 9) (22 . 11)) 9.424 {0/5:10} B:0 3.00042 [ 2.50073] ((20 . 6) (22 . 8) (23 . 9) (24 . 11)) 7.398 {0/4:6} B:0 3.00139 [ 2.50240] ((13 . 1) (16 . 5) (20 . 8) (21 . 9)) 9.962 {0/2:6} B:0 3.00199 [ 2.50343] ((13 . 1) (14 . 2) (20 . 8) (21 . 9)) 10.894 {0/4:6} B:0 3.13887 [ 2.72493] ((16 . 1) (19 . 5) (21 . 6) (23 . 8)) 8.288 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.4999 [and 1/min{score2}: 0.5997] [1981, 3103]: Comparing 1gw0_A and 1jzg_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 13 (5 H + 8 S) secondary structure elements in 1jzg_A, of which 10 satisfy the size requirements. 1.71441 [ 1.42879] ((13 . 1) (16 . 2) (17 . 3) (18 . 5) (22 . 9) (23 . 11) (24 . 13)) 3.611 {0/7:21} B:0 2.40040 [ 2.00068] ((13 . 1) (15 . 2) (22 . 9) (23 . 11) (24 . 13)) 6.154 {0/5:10} B:0 3.00011 [ 2.50019] ((21 . 1) (22 . 2) (23 . 3) (24 . 5)) 5.258 {0/2:6} B:0 3.00069 [ 2.50120] ((15 . 1) (19 . 5) (23 . 9) (24 . 11)) 8.375 {0/4:6} B:0 3.00109 [ 2.50189] ((15 . 1) (17 . 3) (23 . 9) (24 . 13)) 9.383 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.5833 [and 1/min{score2}: 0.6999] [1981, 3255]: Comparing 1gw0_A and 1kbv_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 28 (6 H + 22 S) secondary structure elements in 1kbv_A, of which 11 satisfy the size requirements. 3.00009 [ 2.75011] ((13 . 2) (16 . 5) (17 . 6) (20 . 9)) 4.965 {0/2:6} B:0 3.00055 [ 2.75072] ((13 . 6) (16 . 9) (17 . 10) (18 . 12)) 7.915 {0/1:6} B:0 3.00115 [ 2.75149] ((15 . 2) (18 . 5) (23 . 9) (24 . 10)) 9.502 {0/2:6} B:0 3.00306 [ 2.75397] ((18 . 1) (22 . 2) (23 . 4) (24 . 6)) 12.133 {0/0:6} B:0 3.31040 [ 3.13249] ((15 . 1) (16 . 2) (19 . 5) (23 . 9)) 6.720 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.6228 [and 1/min{score2}: 0.6635] [1981, 3256]: Comparing 1gw0_A and 1kbv_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 28 (6 H + 22 S) secondary structure elements in 1kbv_A, of which 13 satisfy the size requirements. 1.20005 [ 1.30004] ((13 . 13) (15 . 16) (16 . 18) (17 . 19) (18 . 20) (19 . 21) (21 . 24) (22 . 25) (23 . 26) (24 . 28)) 2.168 {0/25:45} B:0 2.40060 [ 2.60048] ((19 . 16) (21 . 18) (22 . 19) (23 . 20) (24 . 24)) 6.843 {0/7:10} B:0 2.40130 [ 2.60102] ((16 . 13) (19 . 16) (22 . 19) (23 . 20) (24 . 24)) 8.279 {0/5:10} B:0 2.40199 [ 2.60157] ((17 . 20) (18 . 21) (21 . 25) (22 . 26) (23 . 28)) 9.218 {0/0:10} B:0 3.00029 [ 3.25023] ((16 . 19) (17 . 20) (18 . 21) (22 . 26)) 6.755 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.8333 [and 1/min{score2}: 0.7692] [1981, 3264]: Comparing 1gw0_A and 1kcw, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 86 (24 H + 62 S) secondary structure elements in 1kcw, of which 11 satisfy the size requirements. 1.78554 [ 1.66177] ((13 . 1) (15 . 4) (16 . 7) (17 . 8) (22 . 11) (23 . 12) (24 . 14)) 3.975 {1/9:21} B:0 2.11919 [ 1.98309] ((15 . 4) (16 . 7) (17 . 8) (22 . 11) (23 . 12) (24 . 14)) 3.955 {1/7:15} B:0 3.00032 [ 2.75041] ((16 . 1) (17 . 2) (20 . 3) (24 . 8)) 6.879 {0/2:6} B:0 3.00047 [ 2.75061] ((16 . 1) (20 . 3) (23 . 7) (24 . 8)) 7.592 {0/3:6} B:0 3.00050 [ 2.75066] ((13 . 1) (16 . 3) (17 . 4) (20 . 8)) 7.732 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.5601 [and 1/min{score2}: 0.6018] [1981, 3265]: Comparing 1gw0_A and 1kcw, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 86 (24 H + 62 S) secondary structure elements in 1kcw, of which 13 satisfy the size requirements. 1.36028 [ 1.46581] ((13 . 15) (15 . 20) (16 . 21) (17 . 22) (18 . 23) (21 . 24) (22 . 25) (23 . 26) (24 . 28)) 3.740 {1/14:36} B:0 1.50051 [ 1.62540] ((13 . 15) (16 . 21) (17 . 22) (18 . 23) (19 . 24) (22 . 25) (23 . 26) (24 . 28)) 4.618 {0/10:28} B:0 1.89157 [ 2.00192] ((15 . 20) (16 . 21) (17 . 22) (18 . 23) (22 . 25) (23 . 26) (24 . 28)) 2.928 {1/7:21} B:0 2.04898 [ 2.20557] ((13 . 15) (16 . 20) (21 . 24) (22 . 25) (23 . 26) (24 . 28)) 9.040 {1/9:15} B:0 2.07242 [ 2.22444] ((14 . 17) (16 . 21) (17 . 22) (22 . 25) (23 . 26) (24 . 28)) 4.238 {1/8:15} B:0 SIMILARITY (1/min{score1}): 0.7351 [and 1/min{score2}: 0.6822] [1981, 3266]: Comparing 1gw0_A and 1kcw, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 86 (24 H + 62 S) secondary structure elements in 1kcw, of which 11 satisfy the size requirements. 1.50017 [ 1.37522] ((13 . 29) (15 . 33) (16 . 35) (17 . 36) (18 . 37) (22 . 38) (23 . 40) (24 . 42)) 3.481 {0/13:28} B:0 1.71438 [ 1.57155] ((15 . 33) (16 . 35) (17 . 36) (18 . 37) (22 . 38) (23 . 40) (24 . 42)) 3.323 {0/10:21} B:0 2.40190 [ 2.20247] ((17 . 35) (18 . 36) (19 . 37) (23 . 38) (24 . 40)) 9.114 {0/2:10} B:0 3.00171 [ 2.75222] ((13 . 33) (17 . 37) (22 . 40) (23 . 42)) 10.493 {0/2:6} B:0 3.31230 [ 3.13474] ((14 . 34) (16 . 37) (18 . 38) (22 . 42)) 11.918 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.7272] [1981, 3267]: Comparing 1gw0_A and 1kcw, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 86 (24 H + 62 S) secondary structure elements in 1kcw, of which 10 satisfy the size requirements. 1.71439 [ 1.42876] ((13 . 59) (15 . 61) (16 . 63) (17 . 64) (22 . 66) (23 . 68) (24 . 70)) 3.461 {0/10:21} B:0 2.40013 [ 2.00022] ((13 . 59) (19 . 64) (22 . 66) (23 . 68) (24 . 70)) 4.647 {0/4:10} B:0 3.00013 [ 2.50023] ((15 . 61) (16 . 63) (17 . 64) (20 . 66)) 5.527 {0/4:6} B:0 3.00029 [ 2.50051] ((13 . 59) (17 . 63) (23 . 68) (24 . 70)) 6.755 {0/1:6} B:0 3.00032 [ 2.50056] ((13 . 63) (17 . 66) (18 . 68) (21 . 70)) 6.913 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.5833 [and 1/min{score2}: 0.6999] [1981, 3272]: Comparing 1gw0_A and 1kdj, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 10 (2 H + 8 S) secondary structure elements in 1kdj, of which 8 satisfy the size requirements. 2.00007 [ 1.33358] ((13 . 1) (16 . 3) (17 . 4) (22 . 7) (23 . 8) (24 . 10)) 3.511 {0/4:15} B:0 2.40001 [ 1.60004] ((16 . 3) (17 . 4) (22 . 7) (23 . 8) (24 . 10)) 2.631 {0/3:10} B:0 3.00018 [ 2.00061] ((16 . 1) (17 . 3) (18 . 4) (23 . 7)) 5.983 {0/1:6} B:0 3.00028 [ 2.00094] ((17 . 3) (22 . 7) (23 . 8) (24 . 10)) 6.669 {0/1:6} B:0 3.00041 [ 2.00139] ((13 . 4) (16 . 7) (17 . 8) (18 . 10)) 7.349 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.5000 [and 1/min{score2}: 0.7499] [1981, 3447]: Comparing 1gw0_A and 1kv7_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 41 (10 H + 31 S) secondary structure elements in 1kv7_A, of which 10 satisfy the size requirements. 1.54869 [ 1.33026] ((13 . 2) (15 . 3) (16 . 4) (17 . 5) (18 . 6) (22 . 8) (23 . 9) (24 . 11)) 4.629 {1/11:28} B:0 2.40231 [ 2.00398] ((13 . 2) (16 . 6) (18 . 8) (19 . 9) (22 . 11)) 9.567 {0/7:10} B:0 3.00008 [ 2.50014] ((16 . 4) (17 . 5) (18 . 6) (20 . 8)) 4.912 {0/3:6} B:0 3.00020 [ 2.50035] ((13 . 2) (15 . 3) (20 . 8) (21 . 9)) 6.171 {0/4:6} B:0 3.00041 [ 2.50071] ((20 . 6) (22 . 8) (23 . 9) (24 . 11)) 7.354 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.6457 [and 1/min{score2}: 0.7517] [1981, 3448]: Comparing 1gw0_A and 1kv7_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 41 (10 H + 31 S) secondary structure elements in 1kv7_A, of which 13 satisfy the size requirements. 1.00103 [ 1.08414] ((13 . 13) (14 . 14) (15 . 15) (16 . 16) (17 . 17) (18 . 18) (19 . 19) (20 . 20) (21 . 22) (22 . 23) (23 . 24) (24 . 25)) 3.414 {1/47:66} B:0 1.09109 [ 1.18196] ((13 . 13) (15 . 15) (16 . 16) (17 . 17) (18 . 18) (19 . 19) (20 . 21) (21 . 22) (22 . 23) (23 . 24) (24 . 25)) 2.813 {0/37:55} B:0 1.09111 [ 1.18197] ((13 . 13) (15 . 15) (16 . 16) (17 . 17) (18 . 18) (19 . 19) (20 . 20) (21 . 22) (22 . 23) (23 . 24) (24 . 25)) 2.860 {0/37:55} B:0 1.20016 [ 1.30013] ((13 . 13) (16 . 16) (17 . 17) (18 . 18) (19 . 19) (20 . 21) (21 . 22) (22 . 23) (23 . 24) (24 . 25)) 2.938 {0/28:45} B:0 2.40097 [ 2.60076] ((15 . 13) (18 . 17) (19 . 18) (22 . 22) (23 . 23)) 7.702 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.9990 [and 1/min{score2}: 0.9224] [1981, 3449]: Comparing 1gw0_A and 1kv7_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 41 (10 H + 31 S) secondary structure elements in 1kv7_A, of which 12 satisfy the size requirements. 1.20013 [ 1.20013] ((13 . 26) (14 . 27) (15 . 30) (17 . 32) (18 . 33) (19 . 34) (21 . 36) (22 . 37) (23 . 39) (24 . 41)) 2.778 {0/30:45} B:0 2.40086 [ 2.40086] ((18 . 32) (19 . 33) (20 . 34) (22 . 36) (24 . 39)) 7.466 {0/4:10} B:0 2.40105 [ 2.40105] ((17 . 33) (18 . 34) (20 . 36) (21 . 37) (23 . 41)) 7.865 {0/3:10} B:0 2.40110 [ 2.40110] ((18 . 32) (19 . 33) (22 . 36) (23 . 37) (24 . 39)) 7.939 {0/2:10} B:0 2.91548 [ 2.91548] ((13 . 26) (15 . 30) (17 . 33) (23 . 39) (24 . 41)) 5.061 {1/4:10} B:0 SIMILARITY (1/min{score1}): 0.8332 [and 1/min{score2}: 0.8332] [1981, 3489]: Comparing 1gw0_A and 1kzq_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 26 (6 H + 20 S) secondary structure elements in 1kzq_A, of which 7 satisfy the size requirements. 1.71449 [ 1.00104] ((13 . 1) (16 . 2) (17 . 3) (18 . 4) (22 . 10) (23 . 12) (24 . 14)) 4.070 {0/4:21} B:0 2.91670 [ 2.56128] ((13 . 1) (15 . 2) (16 . 4) (22 . 10) (23 . 12)) 9.632 {1/4:10} B:0 3.00007 [ 1.75035] ((16 . 2) (17 . 3) (18 . 4) (24 . 12)) 4.721 {0/1:6} B:0 3.00008 [ 1.75042] ((20 . 1) (21 . 2) (22 . 3) (23 . 4)) 4.939 {0/2:6} B:0 3.00015 [ 1.75074] ((16 . 1) (17 . 2) (18 . 3) (19 . 4)) 5.671 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.5833 [and 1/min{score2}: 0.9990] [1981, 3490]: Comparing 1gw0_A and 1kzq_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 26 (6 H + 20 S) secondary structure elements in 1kzq_A, of which 11 satisfy the size requirements. 1.50034 [ 1.37544] ((13 . 16) (16 . 17) (17 . 18) (18 . 19) (19 . 23) (22 . 24) (23 . 25) (24 . 26)) 4.165 {0/8:28} B:0 2.00017 [ 1.83355] ((16 . 17) (17 . 18) (21 . 23) (22 . 24) (23 . 25) (24 . 26)) 4.327 {0/3:15} B:0 2.40033 [ 2.20043] ((15 . 15) (16 . 17) (17 . 18) (18 . 19) (24 . 26)) 5.881 {0/4:10} B:0 2.40033 [ 2.20043] ((19 . 15) (20 . 16) (21 . 17) (22 . 18) (23 . 19)) 5.892 {0/4:10} B:0 2.40094 [ 2.20121] ((16 . 16) (17 . 17) (18 . 18) (22 . 23) (23 . 24)) 7.632 {0/2:10} B:0 SIMILARITY (1/min{score1}): 0.7492 [and 1/min{score2}: 0.8169] [1981, 4610]: Comparing 1gw0_A and 1oe1_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 25 (6 H + 19 S) secondary structure elements in 1oe1_A, of which 10 satisfy the size requirements. 1.71438 [ 1.42874] ((13 . 3) (15 . 4) (16 . 5) (17 . 6) (22 . 9) (23 . 10) (24 . 12)) 3.361 {0/9:21} B:0 3.00036 [ 2.50062] ((13 . 3) (15 . 4) (20 . 9) (21 . 10)) 7.104 {0/4:6} B:0 3.00054 [ 2.50093] ((13 . 6) (16 . 9) (17 . 10) (18 . 12)) 7.849 {0/1:6} B:0 3.00058 [ 2.50101] ((19 . 3) (22 . 5) (23 . 6) (24 . 9)) 8.015 {0/3:6} B:0 3.00184 [ 2.50318] ((17 . 3) (18 . 4) (20 . 5) (21 . 6)) 10.687 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.5833 [and 1/min{score2}: 0.6999] [1981, 4611]: Comparing 1gw0_A and 1oe1_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 25 (6 H + 19 S) secondary structure elements in 1oe1_A, of which 12 satisfy the size requirements. 1.09124 [ 1.09124] ((13 . 13) (14 . 14) (15 . 15) (16 . 17) (17 . 18) (18 . 19) (19 . 20) (20 . 21) (22 . 22) (23 . 23) (24 . 25)) 3.250 {0/34:55} B:0 1.20019 [ 1.20019] ((13 . 13) (15 . 15) (16 . 17) (17 . 18) (18 . 19) (19 . 20) (20 . 21) (22 . 22) (23 . 23) (24 . 25)) 3.050 {0/24:45} B:0 2.00096 [ 2.00096] ((13 . 13) (16 . 15) (19 . 20) (22 . 22) (23 . 23) (24 . 25)) 6.706 {0/7:15} B:0 2.40082 [ 2.40082] ((16 . 18) (17 . 19) (18 . 20) (19 . 21) (22 . 23)) 7.376 {0/5:10} B:0 2.40115 [ 2.40115] ((16 . 18) (17 . 19) (18 . 20) (21 . 22) (22 . 23)) 8.041 {0/1:10} B:0 SIMILARITY (1/min{score1}): 0.9164 [and 1/min{score2}: 0.9164] [1981, 5046]: Comparing 1gw0_A and 1plc, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 10 (2 H + 8 S) secondary structure elements in 1plc, of which 7 satisfy the size requirements. 2.00004 [ 1.16689] ((13 . 1) (16 . 3) (17 . 4) (22 . 7) (23 . 8) (24 . 10)) 3.095 {0/4:15} B:0 2.40001 [ 1.40003] ((16 . 3) (17 . 4) (22 . 7) (23 . 8) (24 . 10)) 2.130 {0/3:10} B:0 3.00015 [ 1.75074] ((16 . 1) (17 . 3) (18 . 4) (23 . 7)) 5.674 {0/1:6} B:0 3.00025 [ 1.75127] ((17 . 3) (22 . 7) (23 . 8) (24 . 10)) 6.507 {0/1:6} B:0 3.00034 [ 1.75171] ((13 . 4) (16 . 7) (17 . 8) (18 . 10)) 7.008 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.5000 [and 1/min{score2}: 0.8570] [1981, 5344]: Comparing 1gw0_A and 1qhq_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 10 (2 H + 8 S) secondary structure elements in 1qhq_A, of which 10 satisfy the size requirements. 1.50039 [ 1.25068] ((13 . 1) (16 . 2) (17 . 3) (18 . 4) (21 . 7) (22 . 8) (23 . 9) (24 . 10)) 4.317 {0/12:28} B:0 1.50040 [ 1.25069] ((13 . 1) (16 . 2) (17 . 3) (18 . 4) (19 . 7) (22 . 8) (23 . 9) (24 . 10)) 4.331 {0/13:28} B:0 2.40043 [ 2.00074] ((13 . 1) (15 . 2) (22 . 8) (23 . 9) (24 . 10)) 6.278 {0/5:10} B:0 2.40157 [ 2.00270] ((15 . 4) (17 . 7) (18 . 8) (19 . 9) (22 . 10)) 8.680 {0/4:10} B:0 2.40197 [ 2.00340] ((15 . 1) (19 . 4) (22 . 7) (23 . 8) (24 . 9)) 9.195 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.6665 [and 1/min{score2}: 0.7996] [1981, 6173]: Comparing 1gw0_A and 1v54_B, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 16 (6 H + 10 S) secondary structure elements in 1v54_B, of which 12 satisfy the size requirements. 2.00228 [ 2.00228] ((16 . 5) (17 . 7) (18 . 8) (19 . 9) (21 . 12) (23 . 15)) 8.320 {0/9:15} B:0 2.02141 [ 2.02141] ((15 . 4) (19 . 8) (21 . 11) (22 . 12) (23 . 13) (24 . 15)) 5.422 {1/11:15} B:0 2.40005 [ 2.40005] ((13 . 3) (16 . 7) (17 . 8) (18 . 9) (19 . 11)) 3.666 {0/5:10} B:0 2.40006 [ 2.40006] ((13 . 3) (15 . 4) (22 . 12) (23 . 13) (24 . 15)) 3.777 {0/6:10} B:0 2.40018 [ 2.40018] ((15 . 4) (19 . 11) (22 . 12) (23 . 13) (24 . 15)) 5.077 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.5099 [and 1/min{score2}: 0.5099] [1981, 6418]: Comparing 1gw0_A and 2cbp, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 10 (3 H + 7 S) secondary structure elements in 2cbp, of which 10 satisfy the size requirements. 3.00011 [ 2.50019] ((16 . 6) (17 . 7) (18 . 8) (19 . 10)) 5.305 {0/3:6} B:0 3.00019 [ 2.50033] ((16 . 3) (18 . 6) (20 . 8) (22 . 10)) 6.077 {0/2:6} B:0 3.00038 [ 2.50066] ((16 . 3) (17 . 4) (18 . 6) (20 . 8)) 7.219 {0/3:6} B:0 3.00074 [ 2.50127] ((18 . 1) (21 . 3) (23 . 6) (24 . 8)) 8.500 {0/1:6} B:0 3.78174 [ 3.57090] ((16 . 1) (22 . 6) (23 . 7) (24 . 10)) 8.428 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.4999 [and 1/min{score2}: 0.5998] [1981, 6424]: Comparing 1gw0_A and 2cua_A, based on their crossing files. There are 42 (10 H + 32 S) secondary structure elements in 1gw0_A, of which 12 satisfy the size requirements. There are 11 (1 H + 10 S) secondary structure elements in 2cua_A, of which 10 satisfy the size requirements. 1.34137 [ 1.12487] ((13 . 3) (15 . 4) (16 . 5) (17 . 6) (18 . 7) (21 . 8) (22 . 9) (23 . 10) (24 . 11)) 1.832 {1/19:36} B:0 2.00025 [ 1.66710] ((16 . 2) (17 . 3) (21 . 8) (22 . 9) (23 . 10) (24 . 11)) 4.786 {0/7:15} B:0 2.37846 [ 2.20685] ((17 . 3) (19 . 6) (21 . 8) (22 . 9) (23 . 10) (24 . 11)) 3.590 {1/5:15} B:0 2.40042 [ 2.00073] ((18 . 6) (19 . 7) (20 . 8) (21 . 9) (23 . 11)) 6.261 {0/4:10} B:0 2.40126 [ 2.00218] ((17 . 5) (18 . 6) (19 . 7) (21 . 9) (23 . 11)) 8.223 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.7485 [and 1/min{score2}: 0.8964] -------------------------------------------------------------------------------------------------------------------------