------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1937 1gsk_A) ( 94 1aac ) 0.3636 0.6663 5.2006 ( 0 2 6) 0 0.5451 0.9920 11 6 ( 1937 1gsk_A) ( 177 1aoz_A) 0.5452 0.6659 6.2393 ( 0 5 15) 0 0.5452 0.6659 11 9 ( 1937 1gsk_A) ( 178 1aoz_A) 0.8181 0.6428 3.0847 ( 0 19 36) 0 0.8181 0.6428 11 14 ( 1937 1gsk_A) ( 179 1aoz_A) 0.9091 0.6250 1.3908 ( 0 26 45) 0 0.9091 0.6250 11 16 ( 1937 1gsk_A) ( 337 1baw_A) 0.5454 0.6665 4.2509 ( 0 3 15) 0 0.5454 0.6665 11 9 ( 1937 1gsk_A) ( 448 1bqk ) 0.5993 0.6234 5.6242 ( 2 14 28) 0 0.6001 0.6450 11 10 ( 1937 1gsk_A) ( 709 1cyx ) 0.4545 0.3571 3.1224 ( 0 5 10) 0 0.5124 0.4710 11 14 ( 1937 1gsk_A) ( 1010 1e30_A) 0.4545 0.3846 5.8381 ( 0 5 10) 0 0.8502 0.7416 11 13 ( 1937 1gsk_A) ( 1644 1fwx_A) 0.3636 0.4000 3.5203 ( 0 2 6) 0 0.6653 0.7084 11 10 ( 1937 1gsk_A) ( 1935 1gsk_A) 0.6363 0.6999 3.2747 ( 0 12 21) 0 0.6363 0.6999 11 10 ( 1937 1gsk_A) ( 1936 1gsk_A) 0.4545 0.4166 4.8924 ( 0 5 10) 0 0.8164 0.7489 11 12 ( 1937 1gsk_A) ( 1937 1gsk_A) 1.0000 1.0000 0.0000 ( 0 39 55) 0 1.0000 1.0000 11 11 ( 1937 1gsk_A) ( 1980 1gw0_A) 0.5451 0.5995 6.5372 ( 0 5 15) 0 0.5451 0.5995 11 10 ( 1937 1gsk_A) ( 1981 1gw0_A) 0.8181 0.7500 2.4899 ( 0 19 36) 0 0.8181 0.7500 11 12 ( 1937 1gsk_A) ( 1982 1gw0_A) 0.9089 0.6666 2.9271 ( 0 28 45) 0 0.9089 0.6666 11 15 ( 1937 1gsk_A) ( 2204 1hfu_A) 0.5451 0.6657 6.5700 ( 0 4 15) 0 0.5451 0.6657 11 9 ( 1937 1gsk_A) ( 2205 1hfu_A) 0.5453 0.4285 5.1979 ( 0 8 15) 0 0.5582 0.4717 11 14 ( 1937 1gsk_A) ( 2206 1hfu_A) 0.9087 0.6666 3.6645 ( 0 26 45) 0 0.9087 0.6666 11 15 ( 1937 1gsk_A) ( 2455 1iby_A) 0.4544 0.4544 6.6455 ( 0 4 10) 0 0.7258 0.7258 11 11 ( 1937 1gsk_A) ( 2522 1iko_P) 0.4545 0.4999 4.5532 ( 0 4 10) 0 0.6361 0.6996 11 10 ( 1937 1gsk_A) ( 2840 1jer ) 0.5453 0.5998 5.0639 ( 0 8 15) 0 0.5453 0.5998 11 10 ( 1937 1gsk_A) ( 3103 1jzg_A) 0.4545 0.5000 1.8375 ( 0 6 10) 0 0.4545 0.5000 11 10 ( 1937 1gsk_A) ( 3255 1kbv_A) 0.5449 0.5449 7.4107 ( 0 10 15) 0 0.5452 0.5452 11 11 ( 1937 1gsk_A) ( 3256 1kbv_A) 0.9090 0.7692 2.5708 ( 0 26 45) 0 0.9090 0.7692 11 13 ( 1937 1gsk_A) ( 3264 1kcw ) 0.4545 0.4545 4.2268 ( 0 5 10) 0 0.5450 0.5450 11 11 ( 1937 1gsk_A) ( 3265 1kcw ) 0.5454 0.4615 3.8755 ( 0 9 15) 0 0.7268 0.6152 11 13 ( 1937 1gsk_A) ( 3266 1kcw ) 0.5454 0.5454 4.0426 ( 0 10 15) 0 0.5454 0.5454 11 11 ( 1937 1gsk_A) ( 3267 1kcw ) 0.5454 0.5999 4.4463 ( 0 10 15) 0 0.6015 0.6470 11 10 ( 1937 1gsk_A) ( 3272 1kdj ) 0.5454 0.7496 4.7143 ( 0 6 15) 0 0.5454 0.7496 11 8 ( 1937 1gsk_A) ( 3447 1kv7_A) 0.4545 0.5000 4.5094 ( 0 5 10) 0 0.4545 0.5000 11 10 ( 1937 1gsk_A) ( 3448 1kv7_A) 0.8180 0.6922 3.5612 ( 0 20 36) 0 0.8180 0.6922 11 13 ( 1937 1gsk_A) ( 3449 1kv7_A) 0.9089 0.8332 2.8177 ( 0 28 45) 0 0.9089 0.8332 11 12 ( 1937 1gsk_A) ( 3489 1kzq_A) 0.4545 0.7142 3.6680 ( 0 0 10) 0 0.6349 0.9860 11 7 ( 1937 1gsk_A) ( 3490 1kzq_A) 0.4544 0.4544 6.1790 ( 0 3 10) 0 0.5451 0.5451 11 11 ( 1937 1gsk_A) ( 4610 1oe1_A) 0.4545 0.5000 3.9609 ( 0 6 10) 0 0.5452 0.5997 11 10 ( 1937 1gsk_A) ( 4611 1oe1_A) 0.8181 0.7500 2.5680 ( 0 18 36) 0 0.8181 0.7500 11 12 ( 1937 1gsk_A) ( 5046 1plc ) 0.4545 0.7141 3.9038 ( 0 5 10) 0 0.4545 0.7141 11 7 ( 1937 1gsk_A) ( 5344 1qhq_A) 0.7259 0.7978 6.4673 ( 0 14 28) 0 0.7446 0.7985 11 10 ( 1937 1gsk_A) ( 6173 1v54_B) 0.4545 0.4166 5.9412 ( 0 5 10) 0 0.4545 0.4166 11 12 ( 1937 1gsk_A) ( 6418 2cbp ) 0.5454 0.5999 3.8329 ( 0 10 15) 0 0.5454 0.5999 11 10 ( 1937 1gsk_A) ( 6424 2cua_A) 0.6363 0.7000 2.5159 ( 0 8 21) 0 0.6363 0.7000 11 10 -------------------------------------------------------------------------------------------------------------------------