------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6560 3chb_D) ( 11 1a0i ) nil ( 6560 3chb_D) ( 49 1a62 ) 0.6246 0.7134 5.9150 ( 0 7 10) 0 0.6246 0.7134 8 7 ( 6560 3chb_D) ( 161 1an8 ) 0.8506 0.7639 4.6059 ( 1 15 21) 0 0.8506 0.7639 8 9 ( 6560 3chb_D) ( 285 1b3q_A) 0.4997 0.3077 6.8583 ( 0 5 6) 0 0.4997 0.4351 8 13 ( 6560 3chb_D) ( 315 1b8a_A) 0.8744 0.7774 4.2558 ( 0 14 21) 0 0.8744 0.7774 8 9 ( 6560 3chb_D) ( 415 1bkb ) 0.7492 0.9967 5.4397 ( 0 11 15) 0 0.7492 0.9967 8 6 ( 6560 3chb_D) ( 452 1br9 ) 0.5000 0.2500 4.2296 ( 0 4 6) 0 0.5517 0.3499 8 16 ( 6560 3chb_D) ( 475 1bvs_A) 0.8721 0.9944 6.2007 ( 0 16 21) 0 0.8721 0.9944 8 7 ( 6560 3chb_D) ( 528 1c4q_A) 0.8562 0.9647 3.3273 ( 1 16 21) 0 0.8562 0.9647 8 7 ( 6560 3chb_D) ( 620 1ckm_A) 0.3670 0.3789 7.6064 ( 1 4 6) 0 0.4999 0.5712 8 7 ( 6560 3chb_D) ( 683 1cuk ) 0.4997 0.6653 7.1920 ( 0 4 6) 0 0.4997 0.6653 8 6 ( 6560 3chb_D) ( 766 1d7q_A) 0.1987 0.1996 7.9826 ( 2 4 6) 0 0.1987 0.1996 8 6 ( 6560 3chb_D) ( 833 1dgs_A) 0.5503 0.5682 6.3832 ( 2 12 15) 0 0.5503 0.5682 8 7 ( 6560 3chb_D) ( 1002 1e1o_A) 0.8743 0.6362 4.4048 ( 0 14 21) 0 0.8743 0.6362 8 11 ( 6560 3chb_D) ( 1081 1e9g_A) 0.4999 0.2222 5.4112 ( 0 3 6) 0 0.4999 0.2334 8 18 ( 6560 3chb_D) ( 1217 1enf_A) 0.7140 0.7140 4.2182 ( 1 11 15) 0 0.7140 0.7140 8 8 ( 6560 3chb_D) ( 1228 1eov_A) 0.8743 0.7774 4.3908 ( 0 14 21) 0 0.8743 0.7774 8 9 ( 6560 3chb_D) ( 1256 1et9_A) 0.7000 0.7000 4.1596 ( 1 10 15) 0 0.7000 0.7000 8 8 ( 6560 3chb_D) ( 1262 1eu3_A) nil ( 6560 3chb_D) ( 1285 1ewi_A) 0.6244 0.8308 6.3846 ( 0 7 10) 0 0.6244 0.8308 8 6 ( 6560 3chb_D) ( 1499 1fgu_A) 0.6242 0.5551 6.7822 ( 0 8 10) 0 0.6247 0.5554 8 9 ( 6560 3chb_D) ( 1500 1fgu_A) 0.8339 0.6272 5.3050 ( 1 13 21) 0 0.8339 0.6272 8 11 ( 6560 3chb_D) ( 1527 1fjg_Q) 0.6241 0.8298 6.9685 ( 0 7 10) 0 0.6241 0.8298 8 6 ( 6560 3chb_D) ( 1542 1fl0_A) 0.5527 0.4363 2.9516 ( 1 7 10) 0 0.5527 0.4363 8 11 ( 6560 3chb_D) ( 1610 1fr3_A) 0.3847 0.3948 6.1689 ( 2 8 10) 0 0.3847 0.3948 8 6 ( 6560 3chb_D) ( 1638 1fvi_A) 0.7133 0.7910 5.8874 ( 1 11 15) 0 0.7133 0.7910 8 7 ( 6560 3chb_D) ( 1696 1g29_1) nil ( 6560 3chb_D) ( 1800 1gd7_A) 0.4999 0.4000 5.3402 ( 0 2 6) 0 0.4999 0.4000 8 10 ( 6560 3chb_D) ( 1870 1gm5_A) 0.6423 0.5586 4.2104 ( 2 14 21) 0 0.6423 0.5586 8 11 ( 6560 3chb_D) ( 1886 1go3_E) 0.4999 0.4999 4.5451 ( 0 4 6) 0 0.4999 0.4999 8 8 ( 6560 3chb_D) ( 1895 1gpc ) 0.4996 0.2666 7.6172 ( 0 4 6) 0 0.4996 0.2666 8 15 ( 6560 3chb_D) ( 1958 1gug_A) 0.3671 0.3880 5.5640 ( 1 4 6) 0 0.3671 0.3880 8 6 ( 6560 3chb_D) ( 1978 1gvp ) 0.7492 0.7492 5.4486 ( 0 10 15) 0 0.7492 0.7492 8 8 ( 6560 3chb_D) ( 2149 1h9k_A) 0.5526 0.5944 4.5912 ( 1 7 10) 0 0.5526 0.5944 8 7 ( 6560 3chb_D) ( 2150 1h9s_A) 0.3671 0.3790 5.9601 ( 1 4 6) 0 0.3671 0.3790 8 7 ( 6560 3chb_D) ( 2212 1hh2_P) nil ( 6560 3chb_D) ( 2382 1i40_A) 0.4998 0.3636 6.2184 ( 0 4 6) 0 0.6247 0.4545 8 11 ( 6560 3chb_D) ( 2384 1i4g_A) 0.7140 0.6458 4.0236 ( 1 11 15) 0 0.7140 0.6458 8 9 ( 6560 3chb_D) ( 2396 1i50_H) 0.4999 0.4444 4.5854 ( 0 4 6) 0 0.7495 0.6664 8 9 ( 6560 3chb_D) ( 2652 1ixr_A) 0.7487 0.9945 6.1921 ( 0 10 15) 0 0.7487 0.9945 8 6 ( 6560 3chb_D) ( 2664 1iyj_B) 0.6249 0.5555 3.9225 ( 0 7 10) 0 0.6249 0.5555 8 9 ( 6560 3chb_D) ( 2665 1iyj_B) 0.4998 0.6660 6.0369 ( 0 3 6) 0 0.4999 0.6664 8 6 ( 6560 3chb_D) ( 2667 1iyj_B) 0.7499 0.6000 3.3488 ( 0 10 15) 0 0.7499 0.6000 8 10 ( 6560 3chb_D) ( 2801 1jb3_A) 0.8728 0.6993 5.8003 ( 0 14 21) 0 0.8728 0.6993 8 10 ( 6560 3chb_D) ( 2802 1jb7_A) 0.5000 0.4444 3.7598 ( 0 4 6) 0 0.5000 0.4444 8 9 ( 6560 3chb_D) ( 2803 1jb7_A) 0.3670 0.3526 6.7992 ( 1 4 6) 0 0.3670 0.3526 8 9 ( 6560 3chb_D) ( 2804 1jb7_A) 0.4969 0.2855 12.7926 ( 0 5 6) 0 0.4969 0.2855 8 14 ( 6560 3chb_D) ( 2805 1jb7_B) 0.6249 0.3846 4.0770 ( 0 7 10) 0 0.7484 0.4614 8 13 ( 6560 3chb_D) ( 2835 1je5_A) 0.1987 0.1970 9.3563 ( 2 4 6) 0 0.1987 0.1970 8 10 ( 6560 3chb_D) ( 2927 1jjc_B) 0.6248 0.7138 5.0015 ( 0 5 10) 0 0.6248 0.7138 8 7 ( 6560 3chb_D) ( 2935 1jjg_A) 0.4998 0.6660 5.9832 ( 0 2 6) 0 0.4998 0.6660 8 6 ( 6560 3chb_D) ( 3054 1jt8_A) 0.7491 0.8554 5.5932 ( 0 10 15) 0 0.7491 0.8554 8 7 ( 6560 3chb_D) ( 3118 1k0r_A) 0.6246 0.8318 5.5859 ( 0 7 10) 0 0.6246 0.8318 8 6 ( 6560 3chb_D) ( 3121 1k0s_A) 0.4997 0.3333 7.1322 ( 0 5 6) 0 0.4997 0.4203 8 12 ( 6560 3chb_D) ( 3341 1kl9_A) 0.1332 0.1327 13.3604 ( 3 4 6) 0 0.1332 0.1327 8 11 ( 6560 3chb_D) ( 3509 1l0w_A) 0.8743 0.7774 4.4091 ( 0 15 21) 0 0.8743 0.7774 8 9 ( 6560 3chb_D) ( 3515 1l1o_C) 0.8743 0.4666 4.3816 ( 0 15 21) 0 0.8743 0.4666 8 15 ( 6560 3chb_D) ( 3726 1ltl_A) 0.8701 0.3499 7.1131 ( 0 14 21) 0 0.8701 0.3499 8 20 ( 6560 3chb_D) ( 3742 1luz_A) 0.7137 0.8766 5.1274 ( 1 11 15) 0 0.7137 0.8766 8 6 ( 6560 3chb_D) ( 3836 1m4v_A) 0.8738 0.7771 4.9287 ( 0 15 21) 0 0.8738 0.7771 8 9 ( 6560 3chb_D) ( 4180 1n9w_A) 0.7498 0.7498 3.9096 ( 0 10 15) 0 0.7498 0.7498 8 8 ( 6560 3chb_D) ( 4330 1nnx_A) 0.7497 0.7497 4.2926 ( 0 10 15) 0 0.7497 0.7497 8 8 ( 6560 3chb_D) ( 4539 1o7i_A) 0.6079 0.5883 5.5690 ( 2 13 21) 0 0.6079 0.5883 8 9 ( 6560 3chb_D) ( 4738 1oo9_B) 0.4998 0.4444 5.9585 ( 0 5 6) 0 0.8724 0.7763 8 9 ( 6560 3chb_D) ( 4821 1oxx_K) 0.4999 0.3636 5.9331 ( 0 4 6) 0 0.7498 0.5454 8 11 ( 6560 3chb_D) ( 4859 1p16_A) 0.7135 0.5871 5.6955 ( 1 11 15) 0 0.7135 0.5871 8 10 ( 6560 3chb_D) ( 4996 1pfs_A) 0.5000 0.6666 3.6785 ( 0 4 6) 0 0.5000 0.6666 8 6 ( 6560 3chb_D) ( 5087 1prt_B) 0.8563 0.8563 3.0384 ( 1 16 21) 0 0.8563 0.8563 8 8 ( 6560 3chb_D) ( 5088 1prt_D) 0.8730 0.8730 5.6937 ( 0 16 21) 0 0.8730 0.8730 8 8 ( 6560 3chb_D) ( 5089 1prt_F) 0.8747 0.9994 3.5360 ( 0 16 21) 0 0.8747 0.9994 8 7 ( 6560 3chb_D) ( 5144 1pxf_A) 0.4990 0.4990 9.6271 ( 0 4 6) 0 0.4990 0.4990 8 8 ( 6560 3chb_D) ( 5148 1pyb_A) 0.6244 0.6244 6.4460 ( 0 5 10) 0 0.6244 0.6244 8 8 ( 6560 3chb_D) ( 5171 1q12_A) 0.4998 0.4443 6.5819 ( 0 4 6) 0 0.4998 0.4443 8 9 ( 6560 3chb_D) ( 5276 1qb5_D) 0.9999 0.9999 1.8631 ( 0 20 28) 0 0.9999 0.9999 8 8 ( 6560 3chb_D) ( 5460 1quq_A) 0.8714 0.6356 6.5722 ( 0 14 21) 0 0.8714 0.6356 8 11 ( 6560 3chb_D) ( 5461 1quq_B) 0.4998 0.4998 6.5375 ( 0 5 6) 0 0.4998 0.4998 8 8 ( 6560 3chb_D) ( 5468 1qvc_A) 0.8730 0.8730 5.6743 ( 0 13 21) 0 0.8730 0.8730 8 8 ( 6560 3chb_D) ( 5505 1qzg_A) 0.7479 0.4614 6.9222 ( 0 9 15) 0 0.7479 0.4614 8 13 ( 6560 3chb_D) ( 5765 1s40_A) 0.7498 0.6666 3.7877 ( 0 10 15) 0 0.7498 0.6666 8 9 ( 6560 3chb_D) ( 5844 1sr3_A) 0.2910 0.2970 5.5740 ( 1 3 6) 0 0.2910 0.2970 8 6 ( 6560 3chb_D) ( 5854 1sty ) 0.3419 0.3374 4.7083 ( 2 7 10) 0 0.4998 0.4443 8 9 ( 6560 3chb_D) ( 5951 1uap_A) 0.4999 0.4444 5.6048 ( 0 4 6) 0 0.4999 0.4444 8 9 ( 6560 3chb_D) ( 5982 1ue1_A) 0.8744 0.6998 4.0999 ( 0 14 21) 0 0.8744 0.6998 8 10 ( 6560 3chb_D) ( 6560 3chb_D) 1.0000 1.0000 0.0000 ( 0 20 28) 0 1.0000 1.0000 8 8 ( 6560 3chb_D) ( 6596 3seb ) 0.7140 0.7140 3.9604 ( 1 11 15) 0 0.7140 0.7140 8 8 ( 6560 3chb_D) ( 6601 3tss ) 0.6250 0.6250 3.0479 ( 0 7 10) 0 0.6250 0.6250 8 8 ( 6560 3chb_D) ( 6603 3ull_A) 0.8305 0.8305 7.4055 ( 1 13 21) 0 0.8305 0.8305 8 8 -------------------------------------------------------------------------------------------------------------------------