------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2803 1jb7_A) ( 11 1a0i ) 0.4443 0.6656 6.7749 ( 0 5 6) 0 0.4443 0.6656 9 6 ( 2803 1jb7_A) ( 49 1a62 ) 0.5555 0.7141 3.9843 ( 0 9 10) 0 0.5555 0.7141 9 7 ( 2803 1jb7_A) ( 161 1an8 ) 0.6666 0.6666 3.2730 ( 0 12 15) 0 0.6666 0.6666 9 9 ( 2803 1jb7_A) ( 285 1b3q_A) 0.4444 0.3077 3.8059 ( 0 5 6) 0 0.5555 0.3846 9 13 ( 2803 1jb7_A) ( 315 1b8a_A) 0.6665 0.6665 4.5523 ( 0 12 15) 0 0.6665 0.6665 9 9 ( 2803 1jb7_A) ( 415 1bkb ) 0.5555 0.8329 4.0425 ( 0 10 10) 0 0.5555 0.8329 9 6 ( 2803 1jb7_A) ( 452 1br9 ) 0.6665 0.3750 4.1090 ( 0 13 15) 0 0.6665 0.3750 9 16 ( 2803 1jb7_A) ( 475 1bvs_A) 0.5551 0.7128 6.8114 ( 0 7 10) 0 0.6656 0.8535 9 7 ( 2803 1jb7_A) ( 528 1c4q_A) 0.5555 0.7140 4.6097 ( 0 8 10) 0 0.5555 0.7140 9 7 ( 2803 1jb7_A) ( 620 1ckm_A) 0.5552 0.7129 6.6219 ( 0 10 10) 0 0.5552 0.7129 9 7 ( 2803 1jb7_A) ( 683 1cuk ) 0.5555 0.8330 3.7112 ( 0 10 10) 0 0.5555 0.8330 9 6 ( 2803 1jb7_A) ( 766 1d7q_A) 0.5555 0.8327 4.4346 ( 0 10 10) 0 0.5555 0.8327 9 6 ( 2803 1jb7_A) ( 833 1dgs_A) 0.5555 0.7140 4.6339 ( 0 9 10) 0 0.5555 0.7140 9 7 ( 2803 1jb7_A) ( 1002 1e1o_A) 0.7669 0.6323 4.4478 ( 1 16 21) 0 0.7669 0.6323 9 11 ( 2803 1jb7_A) ( 1081 1e9g_A) 0.5553 0.2778 6.2045 ( 0 8 10) 0 0.5553 0.2778 9 18 ( 2803 1jb7_A) ( 1217 1enf_A) 0.6665 0.7497 4.3747 ( 0 11 15) 0 0.6665 0.7497 9 8 ( 2803 1jb7_A) ( 1228 1eov_A) 0.6665 0.6665 4.4688 ( 0 13 15) 0 0.6665 0.6665 9 9 ( 2803 1jb7_A) ( 1256 1et9_A) 0.5555 0.6249 4.4294 ( 0 7 10) 0 0.5555 0.6249 9 8 ( 2803 1jb7_A) ( 1262 1eu3_A) 0.5552 0.7131 6.3751 ( 0 6 10) 0 0.5552 0.7131 9 7 ( 2803 1jb7_A) ( 1285 1ewi_A) 0.5108 0.6322 6.0974 ( 1 7 10) 0 0.5108 0.6660 9 6 ( 2803 1jb7_A) ( 1499 1fgu_A) 0.6664 0.6664 4.9671 ( 0 13 15) 0 0.6664 0.6664 9 9 ( 2803 1jb7_A) ( 1500 1fgu_A) 0.8824 0.7249 4.1768 ( 1 22 28) 0 0.8824 0.7249 9 11 ( 2803 1jb7_A) ( 1527 1fjg_Q) 0.6521 0.9086 9.3553 ( 1 13 15) 0 0.6521 0.9086 9 6 ( 2803 1jb7_A) ( 1542 1fl0_A) 0.5107 0.4362 7.2245 ( 1 7 10) 0 0.5107 0.4362 9 11 ( 2803 1jb7_A) ( 1610 1fr3_A) 0.4444 0.6660 5.9347 ( 0 5 6) 0 0.4444 0.6660 9 6 ( 2803 1jb7_A) ( 1638 1fvi_A) 0.5555 0.7141 3.9532 ( 0 9 10) 0 0.5555 0.7141 9 7 ( 2803 1jb7_A) ( 1696 1g29_1) 0.4444 0.6664 4.5796 ( 0 5 6) 0 0.4444 0.6664 9 6 ( 2803 1jb7_A) ( 1800 1gd7_A) 0.4444 0.4000 5.3462 ( 0 5 6) 0 0.5262 0.4819 9 10 ( 2803 1jb7_A) ( 1870 1gm5_A) 0.5554 0.4545 5.4235 ( 0 9 10) 0 0.5554 0.4545 9 11 ( 2803 1jb7_A) ( 1886 1go3_E) 0.4444 0.4999 5.2636 ( 0 5 6) 0 0.4444 0.4999 9 8 ( 2803 1jb7_A) ( 1895 1gpc ) 0.6656 0.3999 6.7424 ( 0 14 15) 0 0.6656 0.3999 9 15 ( 2803 1jb7_A) ( 1958 1gug_A) 0.4444 0.6661 5.7812 ( 0 5 6) 0 0.4444 0.6661 9 6 ( 2803 1jb7_A) ( 1978 1gvp ) 0.5553 0.6245 5.9380 ( 0 8 10) 0 0.5553 0.6245 9 8 ( 2803 1jb7_A) ( 2149 1h9k_A) 0.4444 0.5714 3.7393 ( 0 5 6) 0 0.4444 0.5714 9 7 ( 2803 1jb7_A) ( 2150 1h9s_A) 0.4443 0.5711 6.3109 ( 0 6 6) 0 0.4443 0.5711 9 7 ( 2803 1jb7_A) ( 2212 1hh2_P) 0.5555 0.8332 2.7374 ( 0 10 10) 0 0.5555 0.8332 9 6 ( 2803 1jb7_A) ( 2382 1i40_A) 0.5549 0.4543 7.5136 ( 0 10 10) 0 0.5554 0.4604 9 11 ( 2803 1jb7_A) ( 2384 1i4g_A) 0.6664 0.6664 4.6228 ( 0 11 15) 0 0.6664 0.6664 9 9 ( 2803 1jb7_A) ( 2396 1i50_H) 0.5555 0.5555 3.2906 ( 0 9 10) 0 0.6666 0.6666 9 9 ( 2803 1jb7_A) ( 2652 1ixr_A) 0.5555 0.8332 3.1705 ( 0 9 10) 0 0.5555 0.8332 9 6 ( 2803 1jb7_A) ( 2664 1iyj_B) 0.7709 0.7709 3.8016 ( 1 18 21) 0 0.7709 0.7709 9 9 ( 2803 1jb7_A) ( 2665 1iyj_B) 0.5555 0.8329 4.2001 ( 0 8 10) 0 0.5555 0.8329 9 6 ( 2803 1jb7_A) ( 2667 1iyj_B) 0.9491 0.8686 4.5289 ( 2 29 36) 0 0.9491 0.8686 9 10 ( 2803 1jb7_A) ( 2801 1jb3_A) 0.5555 0.5000 2.7595 ( 0 10 10) 0 0.6583 0.5950 9 10 ( 2803 1jb7_A) ( 2802 1jb7_A) 0.5542 0.5542 9.0360 ( 0 8 10) 0 0.5542 0.5542 9 9 ( 2803 1jb7_A) ( 2803 1jb7_A) 1.0000 1.0000 0.0000 ( 0 33 36) 0 1.0000 1.0000 9 9 ( 2803 1jb7_A) ( 2804 1jb7_A) 0.4440 0.2857 9.2904 ( 0 3 6) 0 0.4440 0.3622 9 14 ( 2803 1jb7_A) ( 2805 1jb7_B) 0.7771 0.5384 5.0101 ( 0 18 21) 0 0.7771 0.5384 9 13 ( 2803 1jb7_A) ( 2835 1je5_A) 0.2862 0.2800 7.9344 ( 1 3 6) 0 0.6449 0.5868 9 10 ( 2803 1jb7_A) ( 2927 1jjc_B) 0.5370 0.6570 3.7175 ( 1 9 10) 0 0.5370 0.6570 9 7 ( 2803 1jb7_A) ( 2935 1jjg_A) 0.5555 0.8333 2.6793 ( 0 10 10) 0 0.5555 0.8333 9 6 ( 2803 1jb7_A) ( 3054 1jt8_A) 0.5555 0.7141 4.0294 ( 0 9 10) 0 0.5555 0.7141 9 7 ( 2803 1jb7_A) ( 3118 1k0r_A) 0.5555 0.8332 2.9245 ( 0 10 10) 0 0.5555 0.8332 9 6 ( 2803 1jb7_A) ( 3121 1k0s_A) 0.5553 0.4166 5.8087 ( 0 7 10) 0 0.5555 0.4166 9 12 ( 2803 1jb7_A) ( 3341 1kl9_A) 0.6664 0.5453 4.9536 ( 0 14 15) 0 0.6664 0.5453 9 11 ( 2803 1jb7_A) ( 3509 1l0w_A) 0.6665 0.6665 4.5153 ( 0 12 15) 0 0.6665 0.6665 9 9 ( 2803 1jb7_A) ( 3515 1l1o_C) 0.4139 0.2639 14.7987 ( 1 6 6) 0 0.4139 0.3042 9 15 ( 2803 1jb7_A) ( 3726 1ltl_A) 0.4443 0.2000 6.5198 ( 0 4 6) 0 0.6525 0.2997 9 20 ( 2803 1jb7_A) ( 3742 1luz_A) 0.5555 0.8330 3.7782 ( 0 9 10) 0 0.5555 0.8330 9 6 ( 2803 1jb7_A) ( 3836 1m4v_A) 0.6516 0.6516 3.8363 ( 1 12 15) 0 0.6516 0.6516 9 9 ( 2803 1jb7_A) ( 4180 1n9w_A) 0.6667 0.7500 2.2592 ( 0 11 15) 0 0.6667 0.7500 9 8 ( 2803 1jb7_A) ( 4330 1nnx_A) 0.7667 0.8555 4.8255 ( 1 16 21) 0 0.7667 0.8555 9 8 ( 2803 1jb7_A) ( 4539 1o7i_A) 0.6665 0.6665 3.9455 ( 0 13 15) 0 0.6665 0.6665 9 9 ( 2803 1jb7_A) ( 4738 1oo9_B) 0.4443 0.4443 7.0629 ( 0 6 6) 0 0.6954 0.6954 9 9 ( 2803 1jb7_A) ( 4821 1oxx_K) 0.4444 0.3636 3.3859 ( 0 5 6) 0 0.5554 0.4545 9 11 ( 2803 1jb7_A) ( 4859 1p16_A) 0.4444 0.3999 6.0779 ( 0 6 6) 0 0.4444 0.3999 9 10 ( 2803 1jb7_A) ( 4996 1pfs_A) 0.4444 0.6665 4.3443 ( 0 5 6) 0 0.4444 0.6665 9 6 ( 2803 1jb7_A) ( 5087 1prt_B) 0.5554 0.6248 4.8083 ( 0 7 10) 0 0.5554 0.6248 9 8 ( 2803 1jb7_A) ( 5088 1prt_D) 0.4444 0.4998 6.1111 ( 0 4 6) 0 0.4444 0.4998 9 8 ( 2803 1jb7_A) ( 5089 1prt_F) 0.5555 0.7140 4.6393 ( 0 7 10) 0 0.5555 0.7140 9 7 ( 2803 1jb7_A) ( 5144 1pxf_A) 0.5109 0.5525 5.0473 ( 1 7 10) 0 0.5109 0.5525 9 8 ( 2803 1jb7_A) ( 5148 1pyb_A) 0.6370 0.6996 5.3795 ( 1 10 15) 0 0.6370 0.6996 9 8 ( 2803 1jb7_A) ( 5171 1q12_A) 0.5285 0.5285 7.1513 ( 2 12 15) 0 0.5285 0.5285 9 9 ( 2803 1jb7_A) ( 5276 1qb5_D) 0.5554 0.6246 5.5961 ( 0 8 10) 0 0.5554 0.6246 9 8 ( 2803 1jb7_A) ( 5460 1quq_A) 0.7668 0.6323 4.6297 ( 1 16 21) 0 0.7668 0.6323 9 11 ( 2803 1jb7_A) ( 5461 1quq_B) 0.6666 0.7499 2.9861 ( 0 11 15) 0 0.6666 0.7499 9 8 ( 2803 1jb7_A) ( 5468 1qvc_A) 0.4439 0.4990 9.5323 ( 0 5 6) 0 0.6648 0.7467 9 8 ( 2803 1jb7_A) ( 5505 1qzg_A) 0.8785 0.6137 5.5715 ( 1 20 28) 0 0.8785 0.6137 9 13 ( 2803 1jb7_A) ( 5765 1s40_A) 0.5543 0.5543 8.8355 ( 0 8 10) 0 0.5543 0.5543 9 9 ( 2803 1jb7_A) ( 5844 1sr3_A) 0.5555 0.8329 4.0394 ( 0 8 10) 0 0.5555 0.8329 9 6 ( 2803 1jb7_A) ( 5854 1sty ) 0.4439 0.4439 9.4784 ( 0 5 6) 0 0.4439 0.4439 9 9 ( 2803 1jb7_A) ( 5951 1uap_A) 0.6666 0.6666 2.5973 ( 0 13 15) 0 0.6805 0.6805 9 9 ( 2803 1jb7_A) ( 5982 1ue1_A) 0.3523 0.3361 11.0818 ( 1 4 6) 0 0.3523 0.3361 9 10 ( 2803 1jb7_A) ( 6560 3chb_D) 0.3526 0.3670 6.7992 ( 1 4 6) 0 0.3526 0.3670 9 8 ( 2803 1jb7_A) ( 6596 3seb ) 0.6664 0.7496 4.6853 ( 0 11 15) 0 0.6664 0.7496 9 8 ( 2803 1jb7_A) ( 6601 3tss ) 0.5554 0.6247 5.5016 ( 0 7 10) 0 0.5554 0.6247 9 8 ( 2803 1jb7_A) ( 6603 3ull_A) 0.6662 0.7491 5.5936 ( 0 12 15) 0 0.6662 0.7491 9 8 -------------------------------------------------------------------------------------------------------------------------