------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6032 1ujd_A) ( 358 1be9_A) 0.9999 0.7000 2.0863 ( 0 19 21) 0 0.9999 0.7000 7 10 ( 6032 1ujd_A) ( 753 1d5g_A) 0.9997 0.9997 2.9607 ( 0 19 21) 0 0.9997 0.9997 7 7 ( 6032 1ujd_A) ( 1464 1fc6_A) 0.8571 0.8571 2.0110 ( 0 14 15) 0 0.9999 0.9999 7 7 ( 6032 1ujd_A) ( 1783 1g9o_A) 0.9999 0.9999 2.3750 ( 0 19 21) 0 0.9999 0.9999 7 7 ( 6032 1ujd_A) ( 2357 1i16 ) 0.8569 0.9996 3.2700 ( 0 13 15) 0 0.8569 0.9996 7 6 ( 6032 1ujd_A) ( 2494 1ihj_A) 0.9999 0.9999 2.2991 ( 0 18 21) 0 0.9999 0.9999 7 7 ( 6032 1ujd_A) ( 2606 1iu0_A) 0.8570 0.9998 2.8261 ( 0 13 15) 0 0.8570 0.9998 7 6 ( 6032 1ujd_A) ( 3150 1k32_A) 0.8571 0.8571 2.5331 ( 0 14 15) 0 0.9998 0.9998 7 7 ( 6032 1ujd_A) ( 3459 1kwa_A) 0.9998 0.9998 2.7632 ( 0 19 21) 0 0.9998 0.9998 7 7 ( 6032 1ujd_A) ( 3549 1l6o_A) 0.9999 0.9999 1.9169 ( 0 19 21) 0 0.9999 0.9999 7 7 ( 6032 1ujd_A) ( 3598 1lcy_A) 0.8570 0.7499 2.8664 ( 0 13 15) 0 0.9998 0.8749 7 8 ( 6032 1ujd_A) ( 3849 1m5z_A) 0.9999 0.9999 2.2577 ( 0 19 21) 0 0.9999 0.9999 7 7 ( 6032 1ujd_A) ( 3918 1mfg_A) 0.8571 0.9998 2.5299 ( 0 13 15) 0 0.8571 0.9998 7 6 ( 6032 1ujd_A) ( 4150 1n7e_A) 0.9998 0.9998 2.8456 ( 0 19 21) 0 0.9998 0.9998 7 7 ( 6032 1ujd_A) ( 4227 1nf3_C) 0.9986 0.8743 4.3879 ( 0 17 21) 0 0.9986 0.8743 7 8 ( 6032 1ujd_A) ( 4592 1obz_A) 0.9999 0.9999 1.8045 ( 0 19 21) 0 0.9999 0.9999 7 7 ( 6032 1ujd_A) ( 4861 1p1d_A) 0.9997 0.9997 3.0058 ( 0 19 21) 0 0.9997 0.9997 7 7 ( 6032 1ujd_A) ( 5195 1q3o_A) 0.9993 0.9993 3.6177 ( 0 19 21) 0 0.9993 0.9993 7 7 ( 6032 1ujd_A) ( 5271 1qau_A) 0.9999 0.7778 2.2376 ( 0 19 21) 0 0.9999 0.7778 7 9 ( 6032 1ujd_A) ( 5272 1qav_A) 0.9999 0.9999 1.7793 ( 0 18 21) 0 0.9999 0.9999 7 7 ( 6032 1ujd_A) ( 5574 1r6j_A) 0.9997 0.9997 2.9805 ( 0 19 21) 0 0.9997 0.9997 7 7 ( 6032 1ujd_A) ( 5625 1rgw_A) 0.8568 0.9993 3.6245 ( 0 12 15) 0 0.8568 0.9993 7 6 ( 6032 1ujd_A) ( 5990 1uep_A) 0.9980 0.8740 4.8080 ( 0 18 21) 0 0.9980 0.8740 7 8 ( 6032 1ujd_A) ( 5991 1ueq_A) 0.9998 0.9998 2.7165 ( 0 19 21) 0 0.9998 0.9998 7 7 ( 6032 1ujd_A) ( 5992 1uew_A) 0.9811 0.9811 3.5632 ( 1 19 21) 0 0.9811 0.9811 7 7 ( 6032 1ujd_A) ( 5994 1uf1_A) 0.9998 0.9998 2.6759 ( 0 19 21) 0 0.9998 0.9998 7 7 ( 6032 1ujd_A) ( 6028 1uit_A) 0.8571 0.9999 2.2567 ( 0 13 15) 0 0.8571 0.9999 7 6 ( 6032 1ujd_A) ( 6032 1ujd_A) 1.0000 1.0000 0.0000 ( 0 19 21) 0 1.0000 1.0000 7 7 ( 6032 1ujd_A) ( 6038 1uju_A) 0.8569 0.9995 3.3732 ( 0 12 15) 0 0.8569 0.9995 7 6 ( 6032 1ujd_A) ( 6039 1ujv_A) 0.8571 0.9999 2.1285 ( 0 12 15) 0 0.8571 0.9999 7 6 -------------------------------------------------------------------------------------------------------------------------