------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [6032, 358]: Comparing 1ujd_A and 1be9_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 12 (4 H + 8 S) secondary structure elements in 1be9_A, of which 10 satisfy the size requirements. 1.00007 [ 1.42860] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (7 . 8) (8 . 9)) 2.086 {0/19:21} B:0 1.76692 [ 2.50587] ((1 . 6) (3 . 9) (4 . 10) (5 . 12)) 12.461 {0/5:6} B:0 4.03617 [ 4.14458] ((3 . 3) (4 . 5) (7 . 8) (8 . 9)) 4.571 {2/5:6} B:0 4.03624 [ 4.14465] ((1 . 2) (2 . 4) (4 . 5) (7 . 8)) 6.310 {2/5:6} B:0 5.01890 [ 5.07660] ((2 . 2) (3 . 3) (5 . 4) (8 . 6)) 9.548 {3/6:6} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.7000] [6032, 753]: Comparing 1ujd_A and 1d5g_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 8 (2 H + 6 S) secondary structure elements in 1d5g_A, of which 7 satisfy the size requirements. 1.00029 [ 1.00029] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 2.961 {0/19:21} B:0 3.76814 [ 3.76814] ((1 . 1) (2 . 3) (4 . 4) (7 . 7) (8 . 8)) 5.474 {3/8:10} B:0 SIMILARITY (1/min{score1}): 0.9997 [and 1/min{score2}: 0.9997] [6032, 1464]: Comparing 1ujd_A and 1fc6_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 29 (12 H + 17 S) secondary structure elements in 1fc6_A, of which 7 satisfy the size requirements. 1.16671 [ 1.16671] ((2 . 7) (3 . 8) (4 . 9) (5 . 10) (7 . 12) (8 . 13)) 2.011 {0/14:15} B:0 4.01494 [ 4.01494] ((3 . 7) (4 . 9) (5 . 10) (7 . 12) (8 . 13)) 4.109 {4/10:10} B:0 4.03623 [ 4.03623] ((2 . 8) (4 . 12) (5 . 13) (8 . 14)) 6.161 {2/5:6} B:0 1.00007 [ 1.00007] ((1 . 14) (2 . 7) (3 . 8) (4 . 9) (5 . 10) (7 . 12) (8 . 13)) 2.067 {0/19:21} B:1 2.63927 [ 2.63927] ((2 . 8) (5 . 13) (7 . 12) (8 . 14)) 8.522 {1/4:6} B:1 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.9999] [6032, 1783]: Comparing 1ujd_A and 1g9o_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 8 (2 H + 6 S) secondary structure elements in 1g9o_A, of which 7 satisfy the size requirements. 1.00012 [ 1.00012] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 2.375 {0/19:21} B:0 1.40635 [ 1.40635] ((2 . 1) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 8.235 {0/8:10} B:0 3.76811 [ 3.76811] ((1 . 1) (3 . 2) (5 . 5) (7 . 7) (8 . 8)) 4.655 {3/8:10} B:0 3.76815 [ 3.76815] ((1 . 1) (2 . 3) (4 . 4) (7 . 7) (8 . 8)) 5.602 {3/8:10} B:0 4.03618 [ 4.03618] ((3 . 2) (4 . 4) (7 . 7) (8 . 8)) 4.831 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.9999] [6032, 2357]: Comparing 1ujd_A and 1i16, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 7 (2 H + 5 S) secondary structure elements in 1i16, of which 6 satisfy the size requirements. 1.16694 [ 1.00044] ((1 . 1) (2 . 2) (3 . 3) (5 . 4) (7 . 6) (8 . 7)) 3.270 {0/13:15} B:0 1.40020 [ 1.20031] ((1 . 1) (2 . 2) (3 . 3) (5 . 4) (8 . 7)) 3.448 {0/9:10} B:0 5.01870 [ 5.01015] ((1 . 1) (2 . 3) (7 . 6) (8 . 7)) 6.430 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.8569 [and 1/min{score2}: 0.9996] [6032, 2494]: Comparing 1ujd_A and 1ihj_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 8 (2 H + 6 S) secondary structure elements in 1ihj_A, of which 7 satisfy the size requirements. 1.00011 [ 1.00011] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 2.299 {0/18:21} B:0 3.76811 [ 3.76811] ((1 . 1) (2 . 3) (4 . 4) (7 . 7) (8 . 8)) 4.569 {3/8:10} B:0 5.01868 [ 5.01868] ((3 . 2) (4 . 4) (7 . 7) (8 . 8)) 5.343 {3/6:6} B:0 6.67466 [ 6.67466] ((1 . 2) (2 . 3) (4 . 7) (5 . 8)) 9.256 {4/6:6} B:0 7.50559 [ 7.50559] ((2 . 1) (3 . 2) (7 . 4) (8 . 5)) 8.026 {3/4:6} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.9999] [6032, 2606]: Comparing 1ujd_A and 1iu0_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 7 (2 H + 5 S) secondary structure elements in 1iu0_A, of which 6 satisfy the size requirements. 1.16682 [ 1.00024] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (7 . 6) (8 . 7)) 2.826 {0/13:15} B:0 3.76813 [ 3.75985] ((1 . 1) (2 . 3) (4 . 4) (7 . 6) (8 . 7)) 5.248 {3/8:10} B:0 SIMILARITY (1/min{score1}): 0.8570 [and 1/min{score2}: 0.9998] [6032, 3150]: Comparing 1ujd_A and 1k32_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 94 (19 H + 75 S) secondary structure elements in 1k32_A, of which 7 satisfy the size requirements. 1.16677 [ 1.16677] ((2 . 71) (3 . 72) (4 . 73) (5 . 74) (7 . 76) (8 . 77)) 2.533 {0/14:15} B:0 4.01494 [ 4.01494] ((3 . 71) (4 . 73) (5 . 74) (7 . 76) (8 . 77)) 4.310 {4/10:10} B:0 4.03622 [ 4.03622] ((2 . 72) (4 . 76) (5 . 77) (8 . 78)) 6.007 {2/5:6} B:0 4.03624 [ 4.03624] ((2 . 72) (4 . 73) (5 . 74) (7 . 76)) 6.342 {2/5:6} B:0 5.01877 [ 5.01877] ((3 . 71) (5 . 72) (7 . 73) (8 . 74)) 7.861 {3/6:6} B:0 SIMILARITY (1/min{score1}): 0.9998 [and 1/min{score2}: 0.9998] [6032, 3459]: Comparing 1ujd_A and 1kwa_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 10 (4 H + 6 S) secondary structure elements in 1kwa_A, of which 7 satisfy the size requirements. 1.00022 [ 1.00022] ((1 . 1) (2 . 2) (3 . 4) (4 . 5) (5 . 6) (7 . 9) (8 . 10)) 2.763 {0/19:21} B:0 3.76814 [ 3.76814] ((1 . 1) (2 . 4) (4 . 5) (7 . 9) (8 . 10)) 5.447 {3/8:10} B:0 4.03617 [ 4.03617] ((3 . 2) (4 . 5) (7 . 9) (8 . 10)) 4.773 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.9998 [and 1/min{score2}: 0.9998] [6032, 3549]: Comparing 1ujd_A and 1l6o_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 8 (2 H + 6 S) secondary structure elements in 1l6o_A, of which 7 satisfy the size requirements. 1.00005 [ 1.00005] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 1.917 {0/19:21} B:0 3.76813 [ 3.76813] ((1 . 1) (2 . 3) (4 . 4) (7 . 7) (8 . 8)) 5.076 {3/8:10} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.9999] [6032, 3598]: Comparing 1ujd_A and 1lcy_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 28 (8 H + 20 S) secondary structure elements in 1lcy_A, of which 8 satisfy the size requirements. 1.16683 [ 1.33344] ((2 . 19) (3 . 21) (4 . 22) (5 . 23) (7 . 25) (8 . 26)) 2.866 {0/13:15} B:0 1.22419 [ 1.37301] ((1 . 19) (3 . 21) (4 . 22) (5 . 23) (7 . 25) (8 . 26)) 7.292 {1/13:15} B:0 1.75171 [ 2.00114] ((3 . 19) (4 . 20) (5 . 21) (8 . 23)) 7.001 {0/5:6} B:0 3.39503 [ 3.43656] ((2 . 21) (4 . 25) (5 . 26) (8 . 27)) 5.851 {2/6:6} B:0 5.01872 [ 5.03177] ((3 . 19) (4 . 20) (7 . 22) (8 . 23)) 6.952 {3/6:6} B:0 SIMILARITY (1/min{score1}): 0.9998 [and 1/min{score2}: 0.8749] [6032, 3849]: Comparing 1ujd_A and 1m5z_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 8 (2 H + 6 S) secondary structure elements in 1m5z_A, of which 7 satisfy the size requirements. 1.00010 [ 1.00010] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 2.258 {0/19:21} B:0 3.76816 [ 3.76816] ((1 . 1) (2 . 3) (4 . 4) (7 . 7) (8 . 8)) 5.698 {3/8:10} B:0 4.03633 [ 4.03633] ((1 . 1) (2 . 3) (3 . 5) (5 . 8)) 7.553 {2/5:6} B:0 5.01879 [ 5.01879] ((2 . 3) (3 . 5) (4 . 7) (5 . 8)) 8.139 {3/6:6} B:0 8.00459 [ 8.00459] ((2 . 1) (3 . 2) (7 . 4) (8 . 5)) 7.045 {4/5:6} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.9999] [6032, 3918]: Comparing 1ujd_A and 1mfg_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 7 (1 H + 6 S) secondary structure elements in 1mfg_A, of which 6 satisfy the size requirements. 1.16677 [ 1.00016] ((1 . 1) (2 . 2) (3 . 3) (5 . 4) (7 . 6) (8 . 7)) 2.530 {0/13:15} B:0 1.40006 [ 1.20009] ((1 . 1) (2 . 2) (3 . 3) (5 . 4) (8 . 7)) 2.526 {0/9:10} B:0 5.01871 [ 5.01015] ((1 . 1) (2 . 3) (7 . 6) (8 . 7)) 6.637 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.8571 [and 1/min{score2}: 0.9998] [6032, 4150]: Comparing 1ujd_A and 1n7e_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 8 (2 H + 6 S) secondary structure elements in 1n7e_A, of which 7 satisfy the size requirements. 1.00025 [ 1.00025] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 2.846 {0/19:21} B:0 3.76815 [ 3.76815] ((1 . 1) (2 . 3) (4 . 4) (7 . 7) (8 . 8)) 5.515 {3/8:10} B:0 SIMILARITY (1/min{score1}): 0.9998 [and 1/min{score2}: 0.9998] [6032, 4227]: Comparing 1ujd_A and 1nf3_C, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 9 (2 H + 7 S) secondary structure elements in 1nf3_C, of which 8 satisfy the size requirements. 1.00141 [ 1.14380] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (7 . 8) (8 . 9)) 4.388 {0/17:21} B:0 1.16716 [ 1.33366] ((1 . 2) (2 . 3) (4 . 5) (5 . 6) (7 . 8) (8 . 9)) 3.788 {0/12:15} B:0 4.03622 [ 4.06116] ((2 . 4) (4 . 5) (7 . 8) (8 . 9)) 5.974 {2/5:6} B:0 4.03626 [ 4.06120] ((1 . 1) (4 . 5) (7 . 8) (8 . 9)) 6.645 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.9986 [and 1/min{score2}: 0.8743] [6032, 4592]: Comparing 1ujd_A and 1obz_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 16 (4 H + 12 S) secondary structure elements in 1obz_A, of which 7 satisfy the size requirements. 1.00004 [ 1.00004] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 1.805 {0/19:21} B:0 3.76813 [ 3.76813] ((1 . 1) (2 . 3) (4 . 4) (7 . 7) (8 . 8)) 5.130 {3/8:10} B:0 4.01494 [ 4.01494] ((3 . 2) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 4.403 {4/10:10} B:0 6.67463 [ 6.67463] ((1 . 2) (2 . 3) (4 . 7) (5 . 8)) 8.429 {4/6:6} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.9999] [6032, 4861]: Comparing 1ujd_A and 1p1d_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 16 (5 H + 11 S) secondary structure elements in 1p1d_A, of which 7 satisfy the size requirements. 1.00031 [ 1.00031] ((1 . 8) (2 . 9) (3 . 10) (4 . 11) (5 . 12) (7 . 15) (8 . 16)) 3.006 {0/19:21} B:0 3.76814 [ 3.76814] ((1 . 8) (2 . 10) (4 . 11) (7 . 15) (8 . 16)) 5.349 {3/8:10} B:0 6.67463 [ 6.67463] ((1 . 9) (2 . 10) (4 . 15) (5 . 16)) 8.531 {4/6:6} B:0 8.00460 [ 8.00460] ((2 . 8) (3 . 9) (7 . 11) (8 . 12)) 7.490 {4/5:6} B:0 6.25396 [ 6.25396] ((2 . 8) (3 . 9) (5 . 16) (7 . 11) (8 . 12)) 6.872 {5/8:10} B:1 SIMILARITY (1/min{score1}): 0.9997 [and 1/min{score2}: 0.9997] [6032, 5195]: Comparing 1ujd_A and 1q3o_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 8 (2 H + 6 S) secondary structure elements in 1q3o_A, of which 7 satisfy the size requirements. 1.00065 [ 1.00065] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 3.618 {0/19:21} B:0 8.00460 [ 8.00460] ((2 . 1) (3 . 2) (7 . 4) (8 . 5)) 7.876 {4/5:6} B:0 SIMILARITY (1/min{score1}): 0.9993 [and 1/min{score2}: 0.9993] [6032, 5271]: Comparing 1ujd_A and 1qau_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 10 (2 H + 8 S) secondary structure elements in 1qau_A, of which 9 satisfy the size requirements. 1.00010 [ 1.28576] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 2.238 {0/19:21} B:0 1.75173 [ 2.25082] ((2 . 5) (3 . 8) (5 . 9) (8 . 10)) 7.025 {0/5:6} B:0 2.63933 [ 2.83696] ((1 . 1) (4 . 4) (7 . 7) (8 . 9)) 8.624 {1/4:6} B:0 3.09276 [ 3.11953] ((1 . 1) (2 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 4.577 {4/13:15} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.7778] [6032, 5272]: Comparing 1ujd_A and 1qav_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 9 (3 H + 6 S) secondary structure elements in 1qav_A, of which 7 satisfy the size requirements. 1.00004 [ 1.00004] ((1 . 1) (2 . 2) (3 . 4) (4 . 5) (5 . 6) (7 . 8) (8 . 9)) 1.779 {0/18:21} B:0 1.40569 [ 1.40569] ((2 . 1) (4 . 5) (5 . 6) (7 . 8) (8 . 9)) 8.012 {0/9:10} B:0 3.76811 [ 3.76811] ((1 . 1) (2 . 4) (4 . 5) (7 . 8) (8 . 9)) 4.628 {3/8:10} B:0 5.01867 [ 5.01867] ((3 . 2) (4 . 5) (7 . 8) (8 . 9)) 4.645 {3/6:6} B:0 6.01091 [ 6.01091] ((1 . 2) (2 . 4) (4 . 8) (5 . 9)) 8.369 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.9999 [and 1/min{score2}: 0.9999] [6032, 5574]: Comparing 1ujd_A and 1r6j_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 8 (2 H + 6 S) secondary structure elements in 1r6j_A, of which 7 satisfy the size requirements. 1.00030 [ 1.00030] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 2.980 {0/19:21} B:0 1.40608 [ 1.40608] ((2 . 1) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 8.144 {0/8:10} B:0 3.09274 [ 3.09274] ((1 . 1) (3 . 2) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 4.125 {4/13:15} B:0 3.35900 [ 3.35900] ((3 . 2) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 4.153 {3/9:10} B:0 SIMILARITY (1/min{score1}): 0.9997 [and 1/min{score2}: 0.9997] [6032, 5625]: Comparing 1ujd_A and 1rgw_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 9 (3 H + 6 S) secondary structure elements in 1rgw_A, of which 6 satisfy the size requirements. 1.16708 [ 1.00066] ((1 . 1) (2 . 2) (3 . 4) (5 . 6) (7 . 8) (8 . 9)) 3.625 {0/12:15} B:0 5.01870 [ 5.01014] ((1 . 1) (2 . 4) (7 . 8) (8 . 9)) 6.138 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.8568 [and 1/min{score2}: 0.9993] [6032, 5990]: Comparing 1ujd_A and 1uep_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 9 (2 H + 7 S) secondary structure elements in 1uep_A, of which 8 satisfy the size requirements. 1.00203 [ 1.14422] ((1 . 1) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (7 . 8) (8 . 9)) 4.808 {0/18:21} B:0 1.00248 [ 1.14452] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (7 . 8) (8 . 9)) 5.053 {0/18:21} B:0 1.40719 [ 1.60483] ((2 . 2) (4 . 5) (5 . 6) (7 . 8) (8 . 9)) 8.495 {0/9:10} B:0 3.35909 [ 3.37684] ((1 . 1) (3 . 3) (5 . 6) (7 . 8) (8 . 9)) 5.932 {3/9:10} B:0 SIMILARITY (1/min{score1}): 0.9980 [and 1/min{score2}: 0.8740] [6032, 5991]: Comparing 1ujd_A and 1ueq_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 8 (2 H + 6 S) secondary structure elements in 1ueq_A, of which 7 satisfy the size requirements. 1.00021 [ 1.00021] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 2.717 {0/19:21} B:0 1.40357 [ 1.40357] ((2 . 1) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 7.125 {0/8:10} B:0 3.76814 [ 3.76814] ((1 . 1) (2 . 3) (4 . 4) (7 . 7) (8 . 8)) 5.422 {3/8:10} B:0 SIMILARITY (1/min{score1}): 0.9998 [and 1/min{score2}: 0.9998] [6032, 5992]: Comparing 1ujd_A and 1uew_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 7 (2 H + 5 S) secondary structure elements in 1uew_A, of which 7 satisfy the size requirements. 1.01924 [ 1.01924] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 6) (8 . 7)) 3.563 {1/19:21} B:0 3.39534 [ 3.39534] ((2 . 3) (3 . 5) (4 . 6) (5 . 7)) 8.132 {2/6:6} B:0 6.01093 [ 6.01093] ((1 . 2) (2 . 3) (4 . 6) (5 . 7)) 8.719 {3/5:6} B:0 8.00459 [ 8.00459] ((2 . 1) (3 . 2) (7 . 4) (8 . 5)) 6.961 {4/5:6} B:0 5.01885 [ 5.01885] ((3 . 1) (5 . 2) (7 . 4) (8 . 3)) 8.939 {3/6:6} B:1 SIMILARITY (1/min{score1}): 0.9811 [and 1/min{score2}: 0.9811] [6032, 5994]: Comparing 1ujd_A and 1uf1_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 8 (2 H + 6 S) secondary structure elements in 1uf1_A, of which 7 satisfy the size requirements. 1.00020 [ 1.00020] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 2.676 {0/19:21} B:0 4.03627 [ 4.03627] ((1 . 1) (2 . 3) (4 . 4) (7 . 7)) 6.852 {2/5:6} B:0 6.67463 [ 6.67463] ((1 . 2) (2 . 3) (4 . 7) (5 . 8)) 8.351 {4/6:6} B:0 8.00460 [ 8.00460] ((2 . 1) (3 . 2) (7 . 4) (8 . 5)) 7.407 {4/5:6} B:0 SIMILARITY (1/min{score1}): 0.9998 [and 1/min{score2}: 0.9998] [6032, 6028]: Comparing 1ujd_A and 1uit_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 9 (2 H + 7 S) secondary structure elements in 1uit_A, of which 6 satisfy the size requirements. 1.16673 [ 1.00010] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (7 . 8) (8 . 9)) 2.257 {0/13:15} B:0 1.40525 [ 1.20830] ((2 . 1) (3 . 3) (4 . 4) (7 . 8) (8 . 9)) 7.852 {0/8:10} B:0 3.76813 [ 3.75984] ((1 . 1) (2 . 3) (4 . 4) (7 . 8) (8 . 9)) 5.079 {3/8:10} B:0 4.03619 [ 4.01967] ((3 . 2) (4 . 4) (7 . 8) (8 . 9)) 5.216 {2/5:6} B:0 5.38759 [ 5.38622] ((2 . 2) (3 . 3) (4 . 4) (5 . 9) (7 . 8) (8 . 1)) 4.315 {7/13:15} B:2 SIMILARITY (1/min{score1}): 0.8571 [and 1/min{score2}: 0.9999] [6032, 6032]: Comparing 1ujd_A and 1ujd_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 0.000 {0/19:21} B:0 3.35900 [ 3.35900] ((3 . 2) (4 . 4) (5 . 5) (7 . 7) (8 . 8)) 4.394 {3/9:10} B:0 3.76810 [ 3.76810] ((1 . 1) (2 . 3) (4 . 4) (7 . 7) (8 . 8)) 4.283 {3/8:10} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [6032, 6038]: Comparing 1ujd_A and 1uju_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 6 (2 H + 4 S) secondary structure elements in 1uju_A, of which 6 satisfy the size requirements. 1.16698 [ 1.00049] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (7 . 5) (8 . 6)) 3.373 {0/12:15} B:0 SIMILARITY (1/min{score1}): 0.8569 [and 1/min{score2}: 0.9995] [6032, 6039]: Comparing 1ujd_A and 1ujv_A, based on their crossing files. There are 8 (2 H + 6 S) secondary structure elements in 1ujd_A, of which 7 satisfy the size requirements. There are 8 (2 H + 6 S) secondary structure elements in 1ujv_A, of which 6 satisfy the size requirements. 1.16672 [ 1.00008] ((1 . 1) (2 . 2) (3 . 3) (5 . 5) (7 . 7) (8 . 8)) 2.129 {0/12:15} B:0 SIMILARITY (1/min{score1}): 0.8571 [and 1/min{score2}: 0.9999] -------------------------------------------------------------------------------------------------------------------------