------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6604 3vub ) ( 251 1azp_A) 0.1987 0.1996 8.8698 ( 2 4 6) 0 0.4999 0.6664 8 6 ( 6604 3vub ) ( 340 1bb9 ) 0.5000 0.6666 3.8062 ( 0 6 6) 0 0.6250 0.8331 8 6 ( 6604 3vub ) ( 414 1bkb ) 0.4999 0.5712 5.3923 ( 0 1 6) 0 0.4999 0.5712 8 7 ( 6604 3vub ) ( 501 1c0m_A) 0.4998 0.6659 6.2695 ( 0 5 6) 0 0.4998 0.6659 8 6 ( 6604 3vub ) ( 1648 1fx7_A) 0.6249 0.7141 3.7234 ( 0 9 10) 0 0.6249 0.7141 8 7 ( 6604 3vub ) ( 1715 1g3s_A) 0.6249 0.7141 4.1244 ( 0 9 10) 0 0.6249 0.7141 8 7 ( 6604 3vub ) ( 2073 1h3z_A) 0.5000 0.5000 4.2881 ( 0 6 6) 0 0.6250 0.6250 8 8 ( 6604 3vub ) ( 2334 1hyo_A) 0.4998 0.3636 6.1953 ( 0 6 6) 0 0.4998 0.3636 8 11 ( 6604 3vub ) ( 2363 1i1j_A) 0.6250 0.6250 2.8043 ( 0 9 10) 0 0.6250 0.6250 8 8 ( 6604 3vub ) ( 2581 1ire_B) 0.6246 0.3571 5.6512 ( 0 8 10) 0 0.6246 0.4103 8 14 ( 6604 3vub ) ( 2900 1jj2_A) 0.6249 0.6249 4.1310 ( 0 10 10) 0 0.6249 0.6249 8 8 ( 6604 3vub ) ( 2913 1jj2_P) 0.6248 0.8327 4.5826 ( 0 9 10) 0 0.6248 0.8327 8 6 ( 6604 3vub ) ( 2916 1jj2_S) 0.4999 0.3636 5.7896 ( 0 6 6) 0 0.6244 0.4544 8 11 ( 6604 3vub ) ( 3300 1khc_A) 0.2462 0.2441 8.0337 ( 2 5 6) 0 0.5000 0.4444 8 9 ( 6604 3vub ) ( 3303 1khi_A) 0.4996 0.6648 7.8246 ( 0 5 6) 0 0.5772 0.6855 8 6 ( 6604 3vub ) ( 3326 1kjw_A) 0.4999 0.5713 4.6769 ( 0 5 6) 0 0.6247 0.7138 8 7 ( 6604 3vub ) ( 3693 1lpl_A) 0.5000 0.6666 3.5906 ( 0 5 6) 0 0.5000 0.6666 8 6 ( 6604 3vub ) ( 3783 1m1f_A) 0.8747 0.7776 3.4577 ( 0 18 21) 0 0.8747 0.7776 8 9 ( 6604 3vub ) ( 3838 1m4z_A) 0.4999 0.2353 5.3874 ( 0 4 6) 0 0.4999 0.2353 8 17 ( 6604 3vub ) ( 3892 1m9s_A) 0.6249 0.8331 3.6007 ( 0 8 10) 0 0.6249 0.8331 8 6 ( 6604 3vub ) ( 4112 1n27_A) 0.5000 0.5714 4.1242 ( 0 6 6) 0 0.5930 0.6567 8 7 ( 6604 3vub ) ( 4209 1ne8_A) 0.9997 0.7999 2.9634 ( 0 25 28) 0 0.9997 0.7999 8 10 ( 6604 3vub ) ( 4236 1ng2_A) 0.2910 0.2945 6.8642 ( 2 6 6) 0 0.4997 0.5709 8 7 ( 6604 3vub ) ( 4665 1oi1_A) 0.4529 0.5284 7.4581 ( 1 6 6) 0 0.4529 0.5284 8 6 ( 6604 3vub ) ( 4842 1oz2_A) 0.4529 0.5285 7.2781 ( 1 6 6) 0 0.4996 0.6648 8 6 ( 6604 3vub ) ( 4843 1oz2_A) 0.4202 0.4664 8.0112 ( 1 5 6) 0 0.4986 0.6610 8 6 ( 6604 3vub ) ( 5014 1pht ) 0.6249 0.7142 3.5612 ( 0 10 10) 0 0.6249 0.7142 8 7 ( 6604 3vub ) ( 5548 1r4k_A) 0.6248 0.4545 4.7641 ( 0 9 10) 0 0.6248 0.4545 8 11 ( 6604 3vub ) ( 5668 1rl2_A) 0.4990 0.5695 9.5745 ( 0 5 6) 0 0.6239 0.7122 8 7 ( 6604 3vub ) ( 5805 1sf9_A) 0.4998 0.4998 6.0200 ( 0 5 6) 0 0.4998 0.4998 8 8 ( 6604 3vub ) ( 5957 1ub4_A) 0.9998 0.7999 2.8437 ( 0 25 28) 0 0.9998 0.7999 8 10 ( 6604 3vub ) ( 6009 1ug1_A) 0.6249 0.8330 3.6961 ( 0 10 10) 0 0.6249 0.8330 8 6 ( 6604 3vub ) ( 6325 1vyn_A) 0.6249 0.4167 4.0114 ( 0 10 10) 0 0.6249 0.4634 8 12 ( 6604 3vub ) ( 6391 2ahj_B) 0.6249 0.3846 3.6481 ( 0 9 10) 0 0.6249 0.4419 8 13 ( 6604 3vub ) ( 6604 3vub ) 1.0000 1.0000 0.0000 ( 0 27 28) 0 1.0000 1.0000 8 8 -------------------------------------------------------------------------------------------------------------------------