------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6391 2ahj_B) ( 251 1azp_A) nil ( 6391 2ahj_B) ( 340 1bb9 ) 0.3753 0.4296 3.6251 ( 3 13 15) 0 0.3753 0.4665 13 6 ( 6391 2ahj_B) ( 414 1bkb ) nil ( 6391 2ahj_B) ( 501 1c0m_A) nil ( 6391 2ahj_B) ( 1648 1fx7_A) 0.4597 0.8206 3.4995 ( 1 13 15) 0 0.4597 0.8206 13 7 ( 6391 2ahj_B) ( 1715 1g3s_A) 0.2975 0.4451 8.9582 ( 1 5 6) 1 0.2975 0.4451 13 7 ( 6391 2ahj_B) ( 2073 1h3z_A) 0.2975 0.4203 6.9591 ( 1 5 6) 0 0.2975 0.4203 13 8 ( 6391 2ahj_B) ( 2334 1hyo_A) 0.3846 0.4545 2.5261 ( 0 9 10) 0 0.4597 0.5412 13 11 ( 6391 2ahj_B) ( 2363 1i1j_A) 0.3077 0.4999 5.6997 ( 0 4 6) 0 0.3846 0.6249 13 8 ( 6391 2ahj_B) ( 2581 1ire_B) 0.9997 0.9284 2.6387 ( 1 71 78) 0 0.9997 0.9284 13 14 ( 6391 2ahj_B) ( 2900 1jj2_A) nil ( 6391 2ahj_B) ( 2913 1jj2_P) nil ( 6391 2ahj_B) ( 2916 1jj2_S) 0.3025 0.3521 9.4129 ( 1 6 6) 0 0.3025 0.3521 13 11 ( 6391 2ahj_B) ( 3300 1khc_A) 0.2975 0.3937 5.4003 ( 1 5 6) 0 0.2975 0.3937 13 9 ( 6391 2ahj_B) ( 3303 1khi_A) nil ( 6391 2ahj_B) ( 3326 1kjw_A) 0.3077 0.5713 4.6786 ( 0 5 6) 0 0.4281 0.5713 13 7 ( 6391 2ahj_B) ( 3693 1lpl_A) 0.3846 0.8333 1.6699 ( 0 8 10) 0 0.3846 0.8333 13 6 ( 6391 2ahj_B) ( 3783 1m1f_A) 0.4596 0.6547 6.7496 ( 1 13 15) 0 0.4596 0.6551 13 9 ( 6391 2ahj_B) ( 3838 1m4z_A) 0.3076 0.2353 8.3235 ( 0 4 6) 0 0.4355 0.3455 13 17 ( 6391 2ahj_B) ( 3892 1m9s_A) 0.1920 0.1996 7.2735 ( 2 4 6) 0 0.1920 0.1996 13 6 ( 6391 2ahj_B) ( 4112 1n27_A) 0.1920 0.1993 7.3723 ( 2 4 6) 0 0.1920 0.1993 13 7 ( 6391 2ahj_B) ( 4209 1ne8_A) 0.3846 0.5000 3.6127 ( 0 8 10) 0 0.4614 0.5996 13 10 ( 6391 2ahj_B) ( 4236 1ng2_A) 0.3026 0.4915 6.9019 ( 1 6 6) 1 0.3026 0.4915 13 7 ( 6391 2ahj_B) ( 4665 1oi1_A) 0.3076 0.6643 8.3369 ( 0 6 6) 0 0.3076 0.6643 13 6 ( 6391 2ahj_B) ( 4842 1oz2_A) 0.3069 0.6331 16.6143 ( 0 6 6) 0 0.3069 0.6331 13 6 ( 6391 2ahj_B) ( 4843 1oz2_A) 0.3065 0.6186 18.4424 ( 0 6 6) 0 0.3065 0.6186 13 6 ( 6391 2ahj_B) ( 5014 1pht ) 0.3846 0.7142 3.6803 ( 0 9 10) 0 0.3846 0.7142 13 7 ( 6391 2ahj_B) ( 5548 1r4k_A) 0.3846 0.4545 4.0990 ( 0 8 10) 0 0.3846 0.4545 13 11 ( 6391 2ahj_B) ( 5668 1rl2_A) nil ( 6391 2ahj_B) ( 5805 1sf9_A) nil ( 6391 2ahj_B) ( 5957 1ub4_A) 0.3846 0.5000 4.4206 ( 0 8 10) 0 0.4596 0.5930 13 10 ( 6391 2ahj_B) ( 6009 1ug1_A) 0.2284 0.2488 7.0609 ( 2 5 6) 0 0.2284 0.2488 13 6 ( 6391 2ahj_B) ( 6325 1vyn_A) 0.3846 0.4167 3.2049 ( 0 9 10) 0 0.3846 0.4167 13 12 ( 6391 2ahj_B) ( 6391 2ahj_B) 1.0000 1.0000 0.0000 ( 0 73 78) 0 1.0000 1.0000 13 13 ( 6391 2ahj_B) ( 6604 3vub ) 0.3846 0.6249 3.6481 ( 0 9 10) 0 0.4419 0.6249 13 8 -------------------------------------------------------------------------------------------------------------------------