------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6009 1ug1_A) ( 251 1azp_A) 0.6665 0.6665 4.3914 ( 0 4 6) 0 0.6666 0.6666 6 6 ( 6009 1ug1_A) ( 340 1bb9 ) 0.8333 0.8333 1.6152 ( 0 10 10) 0 0.8333 0.8333 6 6 ( 6009 1ug1_A) ( 414 1bkb ) 0.2970 0.2945 6.1297 ( 2 6 6) 0 0.2970 0.2945 6 7 ( 6009 1ug1_A) ( 501 1c0m_A) 0.8333 0.8333 2.4542 ( 0 9 10) 0 0.8333 0.8333 6 6 ( 6009 1ug1_A) ( 1648 1fx7_A) 0.8333 0.7143 2.3803 ( 0 9 10) 0 0.8333 0.7143 6 7 ( 6009 1ug1_A) ( 1715 1g3s_A) 0.8332 0.7142 2.7626 ( 0 9 10) 0 0.8332 0.7142 6 7 ( 6009 1ug1_A) ( 2073 1h3z_A) 0.8332 0.6250 2.9260 ( 0 10 10) 0 0.9997 0.7499 6 8 ( 6009 1ug1_A) ( 2334 1hyo_A) nil ( 6009 1ug1_A) ( 2363 1i1j_A) 0.8333 0.6250 2.1716 ( 0 9 10) 0 0.8333 0.6250 6 8 ( 6009 1ug1_A) ( 2581 1ire_B) 0.6640 0.2857 8.5436 ( 0 5 6) 1 0.6640 0.2857 6 14 ( 6009 1ug1_A) ( 2900 1jj2_A) 0.8333 0.6250 2.1026 ( 0 10 10) 0 0.8333 0.6250 6 8 ( 6009 1ug1_A) ( 2913 1jj2_P) 0.8331 0.8331 3.3740 ( 0 9 10) 0 0.8331 0.8331 6 6 ( 6009 1ug1_A) ( 2916 1jj2_S) 0.8328 0.4545 4.3947 ( 0 10 10) 0 0.8328 0.4545 6 11 ( 6009 1ug1_A) ( 3300 1khc_A) 0.6667 0.4444 2.3104 ( 0 6 6) 0 0.8331 0.5555 6 9 ( 6009 1ug1_A) ( 3303 1khi_A) 0.6666 0.6666 2.7797 ( 0 5 6) 0 0.6666 0.6666 6 6 ( 6009 1ug1_A) ( 3326 1kjw_A) 0.6663 0.5713 5.2421 ( 0 6 6) 0 0.6663 0.5713 6 7 ( 6009 1ug1_A) ( 3693 1lpl_A) 0.8333 0.8333 1.8670 ( 0 8 10) 0 0.8333 0.8333 6 6 ( 6009 1ug1_A) ( 3783 1m1f_A) 0.6613 0.4437 10.2297 ( 0 5 6) 0 0.6613 0.4437 6 9 ( 6009 1ug1_A) ( 3838 1m4z_A) 0.6655 0.2353 7.0146 ( 0 3 6) 0 0.6659 0.2353 6 17 ( 6009 1ug1_A) ( 3892 1m9s_A) 0.8333 0.8333 2.5301 ( 0 8 10) 0 0.8333 0.8333 6 6 ( 6009 1ug1_A) ( 4112 1n27_A) 0.8333 0.7143 1.6731 ( 0 9 10) 0 0.9999 0.8571 6 7 ( 6009 1ug1_A) ( 4209 1ne8_A) 0.8331 0.5000 3.4203 ( 0 9 10) 0 0.8331 0.5000 6 10 ( 6009 1ug1_A) ( 4236 1ng2_A) 0.8333 0.7143 1.2376 ( 0 10 10) 0 0.8333 0.7143 6 7 ( 6009 1ug1_A) ( 4665 1oi1_A) 0.6663 0.6663 5.0797 ( 0 6 6) 0 0.6663 0.6663 6 6 ( 6009 1ug1_A) ( 4842 1oz2_A) 0.6664 0.6664 4.9732 ( 0 6 6) 0 0.6664 0.6664 6 6 ( 6009 1ug1_A) ( 4843 1oz2_A) 0.6667 0.6667 2.3276 ( 0 6 6) 0 0.6667 0.6667 6 6 ( 6009 1ug1_A) ( 5014 1pht ) 0.8331 0.7142 3.4029 ( 0 10 10) 0 0.8331 0.7142 6 7 ( 6009 1ug1_A) ( 5548 1r4k_A) 0.6660 0.3636 5.9544 ( 0 6 6) 0 0.6660 0.3636 6 11 ( 6009 1ug1_A) ( 5668 1rl2_A) 0.8333 0.7143 2.3846 ( 0 10 10) 0 0.8333 0.7143 6 7 ( 6009 1ug1_A) ( 5805 1sf9_A) nil ( 6009 1ug1_A) ( 5957 1ub4_A) 0.8330 0.5000 3.9247 ( 0 9 10) 0 0.8330 0.5000 6 10 ( 6009 1ug1_A) ( 6009 1ug1_A) 1.0000 1.0000 0.0000 ( 0 15 15) 0 1.0000 1.0000 6 6 ( 6009 1ug1_A) ( 6325 1vyn_A) 0.6655 0.3333 6.9183 ( 0 6 6) 0 0.6655 0.3333 6 12 ( 6009 1ug1_A) ( 6391 2ahj_B) 0.2488 0.2284 7.0609 ( 2 5 6) 0 0.2488 0.2284 6 13 ( 6009 1ug1_A) ( 6604 3vub ) 0.8330 0.6249 3.6961 ( 0 10 10) 0 0.8330 0.6249 6 8 -------------------------------------------------------------------------------------------------------------------------