------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5957 1ub4_A) ( 251 1azp_A) 0.1654 0.1665 9.0176 ( 3 5 6) 0 0.1654 0.1665 10 6 ( 5957 1ub4_A) ( 340 1bb9 ) 0.5000 0.8332 3.2181 ( 0 9 10) 0 0.5000 0.8332 10 6 ( 5957 1ub4_A) ( 414 1bkb ) 0.4000 0.5713 5.2279 ( 0 4 6) 0 0.5000 0.7140 10 7 ( 5957 1ub4_A) ( 501 1c0m_A) 0.3997 0.6632 9.1234 ( 0 6 6) 0 0.3997 0.6632 10 6 ( 5957 1ub4_A) ( 1648 1fx7_A) 0.3999 0.5708 7.1236 ( 0 5 6) 0 0.5222 0.6025 10 7 ( 5957 1ub4_A) ( 1715 1g3s_A) 0.3999 0.5709 6.9830 ( 0 5 6) 0 0.5948 0.8282 10 7 ( 5957 1ub4_A) ( 2073 1h3z_A) 0.4999 0.6248 4.8264 ( 0 9 10) 0 0.5950 0.7351 10 8 ( 5957 1ub4_A) ( 2334 1hyo_A) 0.3670 0.3418 6.9556 ( 1 5 6) 0 0.4883 0.4472 10 11 ( 5957 1ub4_A) ( 2363 1i1j_A) 0.5000 0.6250 3.2173 ( 0 9 10) 0 0.5385 0.6250 10 8 ( 5957 1ub4_A) ( 2581 1ire_B) 0.4998 0.3571 6.2370 ( 0 7 10) 0 0.5995 0.4285 10 14 ( 5957 1ub4_A) ( 2900 1jj2_A) 0.3665 0.4193 12.3953 ( 1 5 6) 0 0.3665 0.4193 10 8 ( 5957 1ub4_A) ( 2913 1jj2_P) 0.2413 0.2488 7.8877 ( 2 5 6) 0 0.2413 0.2488 10 6 ( 5957 1ub4_A) ( 2916 1jj2_S) 0.3999 0.3636 6.1859 ( 0 6 6) 0 0.4887 0.4474 10 11 ( 5957 1ub4_A) ( 3300 1khc_A) 0.3998 0.4441 8.5674 ( 0 4 6) 0 0.3998 0.4441 10 9 ( 5957 1ub4_A) ( 3303 1khi_A) 0.3363 0.3880 5.3396 ( 1 4 6) 0 0.3363 0.3880 10 6 ( 5957 1ub4_A) ( 3326 1kjw_A) 0.3671 0.4454 6.2486 ( 1 5 6) 0 0.4000 0.5714 10 7 ( 5957 1ub4_A) ( 3693 1lpl_A) 0.4999 0.8325 4.7839 ( 0 8 10) 0 0.4999 0.8325 10 6 ( 5957 1ub4_A) ( 3783 1m1f_A) 0.8979 0.9965 1.2657 ( 1 29 36) 0 0.8979 0.9965 10 9 ( 5957 1ub4_A) ( 3838 1m4z_A) 0.3999 0.2353 6.1763 ( 0 4 6) 0 0.4091 0.3695 10 17 ( 5957 1ub4_A) ( 3892 1m9s_A) 0.5000 0.8330 3.8299 ( 0 8 10) 0 0.5000 0.8330 10 6 ( 5957 1ub4_A) ( 4112 1n27_A) 0.4885 0.6561 6.7155 ( 1 9 10) 0 0.5045 0.6561 10 7 ( 5957 1ub4_A) ( 4209 1ne8_A) 0.8123 0.8123 1.8885 ( 3 32 36) 0 0.8123 0.8123 10 10 ( 5957 1ub4_A) ( 4236 1ng2_A) 0.3999 0.5711 6.1533 ( 0 4 6) 0 0.5000 0.7140 10 7 ( 5957 1ub4_A) ( 4665 1oi1_A) 0.4000 0.6666 3.3493 ( 0 6 6) 0 0.4000 0.6666 10 6 ( 5957 1ub4_A) ( 4842 1oz2_A) 0.4000 0.6666 3.2076 ( 0 6 6) 0 0.4000 0.6666 10 6 ( 5957 1ub4_A) ( 4843 1oz2_A) 0.3999 0.6649 7.6939 ( 0 4 6) 0 0.4000 0.6666 10 6 ( 5957 1ub4_A) ( 5014 1pht ) 0.5999 0.8564 4.4971 ( 0 11 15) 0 0.5999 0.8564 10 7 ( 5957 1ub4_A) ( 5548 1r4k_A) 0.3822 0.3522 9.1334 ( 1 6 6) 0 0.5045 0.4788 10 11 ( 5957 1ub4_A) ( 5668 1rl2_A) 0.3671 0.4454 6.2469 ( 1 5 6) 0 0.5933 0.8204 10 7 ( 5957 1ub4_A) ( 5805 1sf9_A) 0.1970 0.1987 8.6774 ( 3 6 6) 0 0.3823 0.3922 10 8 ( 5957 1ub4_A) ( 5957 1ub4_A) 1.0000 1.0000 0.0000 ( 0 40 45) 0 1.0000 1.0000 10 10 ( 5957 1ub4_A) ( 6009 1ug1_A) 0.5000 0.8330 3.9247 ( 0 9 10) 0 0.5000 0.8330 10 6 ( 5957 1ub4_A) ( 6325 1vyn_A) 0.3999 0.3333 7.4679 ( 0 5 6) 0 0.3999 0.3333 10 12 ( 5957 1ub4_A) ( 6391 2ahj_B) 0.5000 0.3846 4.4206 ( 0 8 10) 0 0.5930 0.4596 10 13 ( 5957 1ub4_A) ( 6604 3vub ) 0.7999 0.9998 2.8437 ( 0 25 28) 0 0.7999 0.9998 10 8 -------------------------------------------------------------------------------------------------------------------------