------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5805 1sf9_A) ( 251 1azp_A) 0.1987 0.1996 7.9398 ( 2 4 6) 0 0.1987 0.1996 8 6 ( 5805 1sf9_A) ( 340 1bb9 ) 0.6250 0.8332 2.7427 ( 0 10 10) 0 0.6250 0.8332 8 6 ( 5805 1sf9_A) ( 414 1bkb ) 0.6248 0.7139 4.6942 ( 0 5 10) 0 0.6248 0.7139 8 7 ( 5805 1sf9_A) ( 501 1c0m_A) 0.6250 0.8333 2.1361 ( 0 9 10) 0 0.6250 0.8333 8 6 ( 5805 1sf9_A) ( 1648 1fx7_A) 0.6250 0.7143 2.5805 ( 0 9 10) 0 0.6250 0.7143 8 7 ( 5805 1sf9_A) ( 1715 1g3s_A) 0.6250 0.7143 2.4457 ( 0 9 10) 0 0.6250 0.7143 8 7 ( 5805 1sf9_A) ( 2073 1h3z_A) nil ( 5805 1sf9_A) ( 2334 1hyo_A) nil ( 5805 1sf9_A) ( 2363 1i1j_A) 0.6250 0.6250 1.9552 ( 0 9 10) 0 0.6250 0.6250 8 8 ( 5805 1sf9_A) ( 2581 1ire_B) 0.2907 0.2458 13.9386 ( 2 6 6) 0 0.2907 0.2458 8 14 ( 5805 1sf9_A) ( 2900 1jj2_A) 0.6250 0.6250 2.0494 ( 0 10 10) 0 0.6250 0.6250 8 8 ( 5805 1sf9_A) ( 2913 1jj2_P) 0.6250 0.8333 1.9915 ( 0 9 10) 0 0.6250 0.8333 8 6 ( 5805 1sf9_A) ( 2916 1jj2_S) 0.6249 0.4545 3.9824 ( 0 10 10) 0 0.6249 0.4545 8 11 ( 5805 1sf9_A) ( 3300 1khc_A) 0.1987 0.1980 7.4389 ( 3 6 6) 0 0.2462 0.2441 8 9 ( 5805 1sf9_A) ( 3303 1khi_A) 0.5774 0.6859 3.4913 ( 1 8 10) 0 0.5774 0.6859 8 6 ( 5805 1sf9_A) ( 3326 1kjw_A) 0.4999 0.5712 5.3457 ( 0 6 6) 0 0.6247 0.7137 8 7 ( 5805 1sf9_A) ( 3693 1lpl_A) 0.2462 0.2488 5.8444 ( 2 5 6) 0 0.2462 0.2488 8 6 ( 5805 1sf9_A) ( 3783 1m1f_A) 0.1987 0.1980 8.8798 ( 3 6 6) 0 0.1987 0.1980 8 9 ( 5805 1sf9_A) ( 3838 1m4z_A) 0.4201 0.2325 8.9506 ( 1 5 6) 0 0.4998 0.2758 8 17 ( 5805 1sf9_A) ( 3892 1m9s_A) 0.6250 0.8332 3.2965 ( 0 8 10) 0 0.6250 0.8332 8 6 ( 5805 1sf9_A) ( 4112 1n27_A) nil ( 5805 1sf9_A) ( 4209 1ne8_A) 0.4999 0.4000 5.2551 ( 0 6 6) 0 0.6226 0.4992 8 10 ( 5805 1sf9_A) ( 4236 1ng2_A) 0.6250 0.7143 1.7528 ( 0 10 10) 0 0.6250 0.7143 8 7 ( 5805 1sf9_A) ( 4665 1oi1_A) 0.5000 0.6666 2.4905 ( 0 6 6) 0 0.5000 0.6666 8 6 ( 5805 1sf9_A) ( 4842 1oz2_A) 0.6024 0.7526 7.2743 ( 1 10 10) 0 0.6024 0.7526 8 6 ( 5805 1sf9_A) ( 4843 1oz2_A) 0.5000 0.6666 2.5576 ( 0 6 6) 0 0.6247 0.8321 8 6 ( 5805 1sf9_A) ( 5014 1pht ) nil ( 5805 1sf9_A) ( 5548 1r4k_A) 0.4530 0.3523 6.7422 ( 1 6 6) 0 0.5000 0.3636 8 11 ( 5805 1sf9_A) ( 5668 1rl2_A) 0.6250 0.7143 1.5743 ( 0 10 10) 0 0.6250 0.7143 8 7 ( 5805 1sf9_A) ( 5805 1sf9_A) 1.0000 1.0000 0.0000 ( 0 26 28) 0 1.0000 1.0000 8 8 ( 5805 1sf9_A) ( 5957 1ub4_A) 0.1987 0.1970 8.6774 ( 3 6 6) 0 0.3922 0.3823 8 10 ( 5805 1sf9_A) ( 6009 1ug1_A) nil ( 5805 1sf9_A) ( 6325 1vyn_A) 0.7344 0.4979 5.8098 ( 1 14 15) 0 0.7344 0.4979 8 12 ( 5805 1sf9_A) ( 6391 2ahj_B) nil ( 5805 1sf9_A) ( 6604 3vub ) 0.4998 0.4998 6.0200 ( 0 5 6) 0 0.4998 0.4998 8 8 -------------------------------------------------------------------------------------------------------------------------