------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5668 1rl2_A) ( 251 1azp_A) 0.5713 0.6664 4.8244 ( 0 4 6) 0 0.7132 0.8310 7 6 ( 5668 1rl2_A) ( 340 1bb9 ) 0.7142 0.8332 3.1038 ( 0 10 10) 0 0.7142 0.8332 7 6 ( 5668 1rl2_A) ( 414 1bkb ) 0.8088 0.8088 3.6045 ( 1 12 15) 0 0.8088 0.8088 7 7 ( 5668 1rl2_A) ( 501 1c0m_A) 0.7143 0.8333 2.5564 ( 0 9 10) 0 0.7143 0.8333 7 6 ( 5668 1rl2_A) ( 1648 1fx7_A) 0.7143 0.7143 2.6015 ( 0 9 10) 0 0.7143 0.7143 7 7 ( 5668 1rl2_A) ( 1715 1g3s_A) 0.7143 0.7143 2.6205 ( 0 9 10) 0 0.7143 0.7143 7 7 ( 5668 1rl2_A) ( 2073 1h3z_A) 0.7138 0.6248 4.9815 ( 0 10 10) 0 0.7138 0.6248 7 8 ( 5668 1rl2_A) ( 2334 1hyo_A) nil ( 5668 1rl2_A) ( 2363 1i1j_A) 0.7143 0.6250 2.5633 ( 0 9 10) 0 0.7143 0.6250 7 8 ( 5668 1rl2_A) ( 2581 1ire_B) nil ( 5668 1rl2_A) ( 2900 1jj2_A) 0.8571 0.7500 1.3066 ( 0 14 15) 0 0.8571 0.7500 7 8 ( 5668 1rl2_A) ( 2913 1jj2_P) 0.7143 0.8333 2.6438 ( 0 9 10) 0 0.7143 0.8333 7 6 ( 5668 1rl2_A) ( 2916 1jj2_S) 0.5713 0.3636 4.6797 ( 0 6 6) 0 0.5713 0.4192 7 11 ( 5668 1rl2_A) ( 3300 1khc_A) 0.2945 0.2862 7.6620 ( 2 6 6) 0 0.4917 0.4161 7 9 ( 5668 1rl2_A) ( 3303 1khi_A) 0.6316 0.6859 3.5365 ( 1 8 10) 0 0.6316 0.6859 7 6 ( 5668 1rl2_A) ( 3326 1kjw_A) 0.5712 0.5712 5.3153 ( 0 6 6) 0 0.5712 0.5712 7 7 ( 5668 1rl2_A) ( 3693 1lpl_A) 0.2477 0.2488 9.3696 ( 2 5 6) 0 0.5713 0.6665 7 6 ( 5668 1rl2_A) ( 3783 1m1f_A) 0.4454 0.3936 6.1835 ( 1 5 6) 0 0.8203 0.6554 7 9 ( 5668 1rl2_A) ( 3838 1m4z_A) 0.3789 0.2287 8.9394 ( 1 4 6) 0 0.3789 0.2287 7 17 ( 5668 1rl2_A) ( 3892 1m9s_A) 0.5943 0.6325 5.1409 ( 1 7 10) 0 0.5943 0.6650 7 6 ( 5668 1rl2_A) ( 4112 1n27_A) 0.7142 0.7142 3.5874 ( 0 9 10) 0 0.7142 0.7142 7 7 ( 5668 1rl2_A) ( 4209 1ne8_A) 0.4453 0.3670 7.6891 ( 1 5 6) 0 0.4454 0.3670 7 10 ( 5668 1rl2_A) ( 4236 1ng2_A) 0.7143 0.7143 2.4881 ( 0 10 10) 0 0.7143 0.7143 7 7 ( 5668 1rl2_A) ( 4665 1oi1_A) 0.5714 0.6666 2.5823 ( 0 6 6) 0 0.5714 0.6666 7 6 ( 5668 1rl2_A) ( 4842 1oz2_A) 0.5714 0.6666 3.3331 ( 0 6 6) 0 0.5714 0.6666 7 6 ( 5668 1rl2_A) ( 4843 1oz2_A) 0.5714 0.6666 2.6655 ( 0 6 6) 0 0.5714 0.6666 7 6 ( 5668 1rl2_A) ( 5014 1pht ) nil ( 5668 1rl2_A) ( 5548 1r4k_A) 0.7131 0.4544 6.4267 ( 0 10 10) 0 0.7142 0.4545 7 11 ( 5668 1rl2_A) ( 5668 1rl2_A) 1.0000 1.0000 0.0000 ( 0 19 21) 0 1.0000 1.0000 7 7 ( 5668 1rl2_A) ( 5805 1sf9_A) 0.7143 0.6250 1.5743 ( 0 10 10) 0 0.7143 0.6250 7 8 ( 5668 1rl2_A) ( 5957 1ub4_A) 0.4454 0.3671 6.2469 ( 1 5 6) 0 0.8204 0.5933 7 10 ( 5668 1rl2_A) ( 6009 1ug1_A) 0.7143 0.8333 2.3846 ( 0 10 10) 0 0.7143 0.8333 7 6 ( 5668 1rl2_A) ( 6325 1vyn_A) 0.7142 0.4167 3.5868 ( 0 10 10) 0 0.7142 0.4167 7 12 ( 5668 1rl2_A) ( 6391 2ahj_B) nil ( 5668 1rl2_A) ( 6604 3vub ) 0.5695 0.4990 9.5745 ( 0 5 6) 0 0.7122 0.6239 7 8 -------------------------------------------------------------------------------------------------------------------------