------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 501 1c0m_A) ( 251 1azp_A) 0.5653 0.5653 3.7322 ( 1 6 10) 0 0.5653 0.5653 6 6 ( 501 1c0m_A) ( 340 1bb9 ) 0.8331 0.8331 3.5109 ( 0 9 10) 0 0.8331 0.8331 6 6 ( 501 1c0m_A) ( 414 1bkb ) 0.6655 0.5709 6.9786 ( 0 5 6) 0 0.8347 0.7655 6 7 ( 501 1c0m_A) ( 501 1c0m_A) 1.0000 1.0000 0.0000 ( 0 13 15) 0 1.0000 1.0000 6 6 ( 501 1c0m_A) ( 1648 1fx7_A) 0.8333 0.7143 2.5969 ( 0 8 10) 0 0.8333 0.7143 6 7 ( 501 1c0m_A) ( 1715 1g3s_A) 0.8333 0.7142 2.6936 ( 0 8 10) 0 0.8333 0.7142 6 7 ( 501 1c0m_A) ( 2073 1h3z_A) 0.1665 0.1662 6.7366 ( 3 5 6) 0 0.7247 0.5927 6 8 ( 501 1c0m_A) ( 2334 1hyo_A) nil ( 501 1c0m_A) ( 2363 1i1j_A) 0.8333 0.6250 2.3502 ( 0 8 10) 0 0.8333 0.6250 6 8 ( 501 1c0m_A) ( 2581 1ire_B) nil ( 501 1c0m_A) ( 2900 1jj2_A) 0.8332 0.6250 2.8028 ( 0 9 10) 0 0.8332 0.6250 6 8 ( 501 1c0m_A) ( 2913 1jj2_P) 0.8332 0.8332 2.7363 ( 0 8 10) 0 0.8332 0.8332 6 6 ( 501 1c0m_A) ( 2916 1jj2_S) 0.6658 0.3636 6.5174 ( 0 6 6) 0 0.6658 0.3636 6 11 ( 501 1c0m_A) ( 3300 1khc_A) 0.6666 0.4444 3.3920 ( 0 5 6) 0 0.6666 0.4444 6 9 ( 501 1c0m_A) ( 3303 1khi_A) 0.6658 0.6658 6.4338 ( 0 4 6) 0 0.6658 0.6658 6 6 ( 501 1c0m_A) ( 3326 1kjw_A) 0.7258 0.6569 4.2703 ( 1 9 10) 0 0.7258 0.6569 6 7 ( 501 1c0m_A) ( 3693 1lpl_A) 0.6648 0.6648 7.8148 ( 0 5 6) 0 0.6648 0.6648 6 6 ( 501 1c0m_A) ( 3783 1m1f_A) 0.6639 0.4441 8.6310 ( 0 6 6) 0 0.6639 0.4441 6 9 ( 501 1c0m_A) ( 3838 1m4z_A) 0.8321 0.2941 5.3615 ( 0 8 10) 0 0.9804 0.3528 6 17 ( 501 1c0m_A) ( 3892 1m9s_A) 0.8332 0.8332 3.0923 ( 0 7 10) 0 0.8332 0.8332 6 6 ( 501 1c0m_A) ( 4112 1n27_A) 0.8332 0.7142 3.1027 ( 0 8 10) 0 0.8332 0.7142 6 7 ( 501 1c0m_A) ( 4209 1ne8_A) 0.6662 0.4000 5.4747 ( 0 6 6) 0 0.6662 0.4000 6 10 ( 501 1c0m_A) ( 4236 1ng2_A) 0.8333 0.7143 2.4136 ( 0 9 10) 0 0.8333 0.7143 6 7 ( 501 1c0m_A) ( 4665 1oi1_A) 0.6666 0.6666 3.1206 ( 0 5 6) 0 0.6666 0.6666 6 6 ( 501 1c0m_A) ( 4842 1oz2_A) 0.6666 0.6666 3.8254 ( 0 5 6) 0 0.6666 0.6666 6 6 ( 501 1c0m_A) ( 4843 1oz2_A) 0.6666 0.6666 3.2528 ( 0 5 6) 0 0.6666 0.6666 6 6 ( 501 1c0m_A) ( 5014 1pht ) nil ( 501 1c0m_A) ( 5548 1r4k_A) 0.6663 0.3636 5.3428 ( 0 5 6) 0 0.6666 0.3636 6 11 ( 501 1c0m_A) ( 5668 1rl2_A) 0.8333 0.7143 2.5564 ( 0 9 10) 0 0.8333 0.7143 6 7 ( 501 1c0m_A) ( 5805 1sf9_A) 0.8333 0.6250 2.1361 ( 0 9 10) 0 0.8333 0.6250 6 8 ( 501 1c0m_A) ( 5957 1ub4_A) 0.6632 0.3997 9.1234 ( 0 6 6) 0 0.6632 0.3997 6 10 ( 501 1c0m_A) ( 6009 1ug1_A) 0.8333 0.8333 2.4542 ( 0 9 10) 0 0.8333 0.8333 6 6 ( 501 1c0m_A) ( 6325 1vyn_A) 0.8330 0.4167 3.7605 ( 0 9 10) 0 0.8330 0.4167 6 12 ( 501 1c0m_A) ( 6391 2ahj_B) nil ( 501 1c0m_A) ( 6604 3vub ) 0.6659 0.4998 6.2695 ( 0 5 6) 0 0.6659 0.4998 6 8 -------------------------------------------------------------------------------------------------------------------------