------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4665 1oi1_A) ( 251 1azp_A) 0.6661 0.6661 5.7202 ( 0 4 6) 0 0.6661 0.6661 6 6 ( 4665 1oi1_A) ( 340 1bb9 ) 0.6666 0.6666 2.5951 ( 0 6 6) 0 0.6666 0.6666 6 6 ( 4665 1oi1_A) ( 414 1bkb ) 0.6666 0.5714 3.3004 ( 0 5 6) 0 0.6666 0.5714 6 7 ( 4665 1oi1_A) ( 501 1c0m_A) 0.6666 0.6666 3.1206 ( 0 5 6) 0 0.6666 0.6666 6 6 ( 4665 1oi1_A) ( 1648 1fx7_A) 0.6666 0.5714 2.7974 ( 0 5 6) 0 0.6666 0.5714 6 7 ( 4665 1oi1_A) ( 1715 1g3s_A) 0.6661 0.5712 5.7193 ( 0 6 6) 0 0.6661 0.5712 6 7 ( 4665 1oi1_A) ( 2073 1h3z_A) 0.6661 0.4999 5.8579 ( 0 5 6) 0 0.8321 0.6247 6 8 ( 4665 1oi1_A) ( 2334 1hyo_A) 0.2970 0.2728 6.6828 ( 2 6 6) 0 0.7256 0.4474 6 11 ( 4665 1oi1_A) ( 2363 1i1j_A) 0.6667 0.5000 1.8428 ( 0 6 6) 0 0.6667 0.5000 6 8 ( 4665 1oi1_A) ( 2581 1ire_B) nil ( 4665 1oi1_A) ( 2900 1jj2_A) 0.7254 0.5929 5.3967 ( 1 9 10) 0 0.7254 0.5929 6 8 ( 4665 1oi1_A) ( 2913 1jj2_P) 0.6666 0.6666 3.8885 ( 0 5 6) 0 0.6666 0.6666 6 6 ( 4665 1oi1_A) ( 2916 1jj2_S) 0.6664 0.3636 4.6937 ( 0 6 6) 0 0.6664 0.3636 6 11 ( 4665 1oi1_A) ( 3300 1khc_A) 0.6666 0.4444 2.6947 ( 0 6 6) 0 0.8317 0.5553 6 9 ( 4665 1oi1_A) ( 3303 1khi_A) 0.6666 0.6666 2.4037 ( 0 5 6) 0 0.6666 0.6666 6 6 ( 4665 1oi1_A) ( 3326 1kjw_A) 0.6667 0.5714 2.2355 ( 0 6 6) 0 0.6667 0.5714 6 7 ( 4665 1oi1_A) ( 3693 1lpl_A) 0.6520 0.6520 13.2475 ( 0 6 6) 0 0.6520 0.6520 6 6 ( 4665 1oi1_A) ( 3783 1m1f_A) 0.6664 0.4444 4.9627 ( 0 5 6) 0 0.6666 0.4444 6 9 ( 4665 1oi1_A) ( 3838 1m4z_A) 0.5282 0.2339 8.0523 ( 1 6 6) 0 0.5282 0.2339 6 17 ( 4665 1oi1_A) ( 3892 1m9s_A) nil ( 4665 1oi1_A) ( 4112 1n27_A) 0.8329 0.7141 4.0706 ( 0 8 10) 0 0.8329 0.7141 6 7 ( 4665 1oi1_A) ( 4209 1ne8_A) 0.5287 0.3823 6.0763 ( 1 6 6) 0 0.6665 0.4000 6 10 ( 4665 1oi1_A) ( 4236 1ng2_A) 0.6666 0.5714 2.6377 ( 0 6 6) 0 0.6666 0.5714 6 7 ( 4665 1oi1_A) ( 4665 1oi1_A) 1.0000 1.0000 0.0000 ( 0 15 15) 0 1.0000 1.0000 6 6 ( 4665 1oi1_A) ( 4842 1oz2_A) 0.8333 0.8333 1.0311 ( 0 9 10) 0 0.8333 0.8333 6 6 ( 4665 1oi1_A) ( 4843 1oz2_A) 0.8333 0.8333 0.8381 ( 0 9 10) 0 0.8333 0.8333 6 6 ( 4665 1oi1_A) ( 5014 1pht ) nil ( 4665 1oi1_A) ( 5548 1r4k_A) 0.6642 0.3635 8.3628 ( 0 5 6) 0 0.6642 0.3635 6 11 ( 4665 1oi1_A) ( 5668 1rl2_A) 0.6666 0.5714 2.5823 ( 0 6 6) 0 0.6666 0.5714 6 7 ( 4665 1oi1_A) ( 5805 1sf9_A) 0.6666 0.5000 2.4905 ( 0 6 6) 0 0.6666 0.5000 6 8 ( 4665 1oi1_A) ( 5957 1ub4_A) 0.6666 0.4000 3.3493 ( 0 6 6) 0 0.6666 0.4000 6 10 ( 4665 1oi1_A) ( 6009 1ug1_A) 0.6663 0.6663 5.0797 ( 0 6 6) 0 0.6663 0.6663 6 6 ( 4665 1oi1_A) ( 6325 1vyn_A) 0.6637 0.3332 8.7776 ( 0 5 6) 0 0.6664 0.3333 6 12 ( 4665 1oi1_A) ( 6391 2ahj_B) 0.6643 0.3076 8.3369 ( 0 6 6) 0 0.6643 0.3076 6 13 ( 4665 1oi1_A) ( 6604 3vub ) 0.5284 0.4529 7.4581 ( 1 6 6) 0 0.5284 0.4529 6 8 -------------------------------------------------------------------------------------------------------------------------