------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 414 1bkb ) ( 251 1azp_A) 0.7142 0.8331 3.4897 ( 0 6 10) 0 0.7142 0.8331 7 6 ( 414 1bkb ) ( 340 1bb9 ) 0.4454 0.4667 6.1081 ( 1 5 6) 0 0.4454 0.4667 7 6 ( 414 1bkb ) ( 414 1bkb ) 1.0000 1.0000 0.0000 ( 0 16 21) 0 1.0000 1.0000 7 7 ( 414 1bkb ) ( 501 1c0m_A) 0.5709 0.6655 6.9786 ( 0 5 6) 0 0.7655 0.8347 7 6 ( 414 1bkb ) ( 1648 1fx7_A) 0.3789 0.3789 7.7094 ( 1 4 6) 0 0.3789 0.3789 7 7 ( 414 1bkb ) ( 1715 1g3s_A) 0.5711 0.5711 6.0139 ( 0 1 6) 0 0.5711 0.5711 7 7 ( 414 1bkb ) ( 2073 1h3z_A) 0.7142 0.6249 3.5921 ( 0 8 10) 0 0.7142 0.6249 7 8 ( 414 1bkb ) ( 2334 1hyo_A) nil ( 414 1bkb ) ( 2363 1i1j_A) 0.4455 0.4204 5.1099 ( 1 5 6) 0 0.4455 0.4204 7 8 ( 414 1bkb ) ( 2581 1ire_B) nil ( 414 1bkb ) ( 2900 1jj2_A) 0.8206 0.7304 3.4069 ( 1 13 15) 0 0.8206 0.7304 7 8 ( 414 1bkb ) ( 2913 1jj2_P) 0.7140 0.8327 4.4987 ( 0 5 10) 0 0.7140 0.8327 7 6 ( 414 1bkb ) ( 2916 1jj2_S) 0.5712 0.3636 5.3202 ( 0 5 6) 0 0.5712 0.4788 7 11 ( 414 1bkb ) ( 3300 1khc_A) 0.5714 0.4444 2.4197 ( 0 5 6) 0 0.5714 0.4444 7 9 ( 414 1bkb ) ( 3303 1khi_A) 0.8088 0.9059 3.5584 ( 1 12 15) 0 0.8088 0.9059 7 6 ( 414 1bkb ) ( 3326 1kjw_A) 0.2477 0.2477 8.2361 ( 2 5 6) 0 0.5712 0.5712 7 7 ( 414 1bkb ) ( 3693 1lpl_A) 0.5707 0.6651 7.4743 ( 0 5 6) 0 0.5707 0.6651 7 6 ( 414 1bkb ) ( 3783 1m1f_A) 0.5712 0.4444 5.5386 ( 0 4 6) 0 0.5712 0.4444 7 9 ( 414 1bkb ) ( 3838 1m4z_A) 0.7688 0.3516 4.9740 ( 1 10 15) 0 0.7688 0.3516 7 17 ( 414 1bkb ) ( 3892 1m9s_A) 0.3789 0.3878 8.9747 ( 1 4 6) 0 0.3789 0.3878 7 6 ( 414 1bkb ) ( 4112 1n27_A) 0.7142 0.7142 3.1612 ( 0 7 10) 0 0.7142 0.7142 7 7 ( 414 1bkb ) ( 4209 1ne8_A) 0.5713 0.4000 5.1072 ( 0 4 6) 0 0.5713 0.4000 7 10 ( 414 1bkb ) ( 4236 1ng2_A) 0.7142 0.7142 3.1345 ( 0 8 10) 0 0.7142 0.7142 7 7 ( 414 1bkb ) ( 4665 1oi1_A) 0.5712 0.6661 5.6987 ( 0 3 6) 0 0.5712 0.6661 7 6 ( 414 1bkb ) ( 4842 1oz2_A) 0.5710 0.6658 6.4023 ( 0 3 6) 0 0.5710 0.6658 7 6 ( 414 1bkb ) ( 4843 1oz2_A) 0.5712 0.6661 5.7052 ( 0 3 6) 0 0.5712 0.6661 7 6 ( 414 1bkb ) ( 5014 1pht ) 0.7141 0.7141 4.0673 ( 0 8 10) 0 0.7141 0.7141 7 7 ( 414 1bkb ) ( 5548 1r4k_A) 0.7133 0.4544 6.1648 ( 0 8 10) 0 0.7133 0.4544 7 11 ( 414 1bkb ) ( 5668 1rl2_A) 0.8088 0.8088 3.6045 ( 1 12 15) 0 0.8088 0.8088 7 7 ( 414 1bkb ) ( 5805 1sf9_A) 0.7139 0.6248 4.6942 ( 0 5 10) 0 0.7139 0.6248 7 8 ( 414 1bkb ) ( 5957 1ub4_A) 0.4338 0.3966 5.9916 ( 2 9 10) 0 0.7140 0.5000 7 10 ( 414 1bkb ) ( 6009 1ug1_A) 0.2945 0.2970 6.1297 ( 2 6 6) 0 0.2945 0.2970 7 6 ( 414 1bkb ) ( 6325 1vyn_A) 0.5707 0.3333 7.5475 ( 0 3 6) 0 0.5942 0.4281 7 12 ( 414 1bkb ) ( 6391 2ahj_B) nil ( 414 1bkb ) ( 6604 3vub ) 0.5713 0.5000 4.4875 ( 0 4 6) 0 0.5713 0.5000 7 8 -------------------------------------------------------------------------------------------------------------------------