------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4112 1n27_A) ( 251 1azp_A) 0.5714 0.6666 3.7189 ( 0 4 6) 0 0.5714 0.6666 7 6 ( 4112 1n27_A) ( 340 1bb9 ) 0.7143 0.8333 1.7151 ( 0 9 10) 0 0.7143 0.8333 7 6 ( 4112 1n27_A) ( 414 1bkb ) 0.7142 0.7142 3.1612 ( 0 7 10) 0 0.7142 0.7142 7 7 ( 4112 1n27_A) ( 501 1c0m_A) 0.7142 0.8332 3.1027 ( 0 8 10) 0 0.7142 0.8332 7 6 ( 4112 1n27_A) ( 1648 1fx7_A) 0.7142 0.7142 2.8430 ( 0 8 10) 0 0.7142 0.7142 7 7 ( 4112 1n27_A) ( 1715 1g3s_A) 0.7142 0.7142 3.3023 ( 0 8 10) 0 0.7142 0.7142 7 7 ( 4112 1n27_A) ( 2073 1h3z_A) 0.9649 0.8563 2.8877 ( 1 16 21) 0 0.9649 0.8563 7 8 ( 4112 1n27_A) ( 2334 1hyo_A) 0.7143 0.4545 2.3638 ( 0 9 10) 0 0.7143 0.4545 7 11 ( 4112 1n27_A) ( 2363 1i1j_A) 0.7143 0.6250 2.6373 ( 0 9 10) 0 0.7143 0.6250 7 8 ( 4112 1n27_A) ( 2581 1ire_B) 0.2477 0.2228 8.3765 ( 2 5 6) 0 0.5704 0.2857 7 14 ( 4112 1n27_A) ( 2900 1jj2_A) 0.7136 0.6247 5.5174 ( 0 7 10) 0 0.7142 0.6250 7 8 ( 4112 1n27_A) ( 2913 1jj2_P) 0.7141 0.8330 3.8160 ( 0 8 10) 0 0.7141 0.8330 7 6 ( 4112 1n27_A) ( 2916 1jj2_S) 0.7140 0.4545 4.4659 ( 0 9 10) 0 0.7140 0.4545 7 11 ( 4112 1n27_A) ( 3300 1khc_A) 0.7142 0.5555 2.7292 ( 0 9 10) 0 0.7142 0.5555 7 9 ( 4112 1n27_A) ( 3303 1khi_A) 0.5944 0.6326 4.4843 ( 1 7 10) 0 0.5944 0.6666 7 6 ( 4112 1n27_A) ( 3326 1kjw_A) 0.6569 0.6569 3.7495 ( 1 9 10) 0 0.6569 0.6569 7 7 ( 4112 1n27_A) ( 3693 1lpl_A) nil ( 4112 1n27_A) ( 3783 1m1f_A) 0.7126 0.5551 6.9675 ( 0 9 10) 0 0.7126 0.5551 7 9 ( 4112 1n27_A) ( 3838 1m4z_A) 0.7140 0.2941 4.2958 ( 0 9 10) 0 0.7874 0.3519 7 17 ( 4112 1n27_A) ( 3892 1m9s_A) 0.7143 0.8333 2.2846 ( 0 8 10) 0 0.7143 0.8333 7 6 ( 4112 1n27_A) ( 4112 1n27_A) 1.0000 1.0000 0.0000 ( 0 17 21) 0 1.0000 1.0000 7 7 ( 4112 1n27_A) ( 4209 1ne8_A) 0.7143 0.5000 2.6024 ( 0 9 10) 0 0.7143 0.5000 7 10 ( 4112 1n27_A) ( 4236 1ng2_A) 0.7143 0.7143 1.7255 ( 0 9 10) 0 0.7143 0.7143 7 7 ( 4112 1n27_A) ( 4665 1oi1_A) 0.7141 0.8329 4.0706 ( 0 8 10) 0 0.7141 0.8329 7 6 ( 4112 1n27_A) ( 4842 1oz2_A) 0.7142 0.8330 3.7073 ( 0 8 10) 0 0.7142 0.8330 7 6 ( 4112 1n27_A) ( 4843 1oz2_A) 0.7141 0.8329 3.9881 ( 0 8 10) 0 0.7141 0.8329 7 6 ( 4112 1n27_A) ( 5014 1pht ) 0.7142 0.7142 2.6932 ( 0 9 10) 0 0.7142 0.7142 7 7 ( 4112 1n27_A) ( 5548 1r4k_A) 0.7143 0.4545 2.3239 ( 0 8 10) 0 0.7143 0.4545 7 11 ( 4112 1n27_A) ( 5668 1rl2_A) 0.7142 0.7142 3.5874 ( 0 9 10) 0 0.7142 0.7142 7 7 ( 4112 1n27_A) ( 5805 1sf9_A) nil ( 4112 1n27_A) ( 5957 1ub4_A) 0.6561 0.4885 6.7155 ( 1 9 10) 0 0.6561 0.5045 7 10 ( 4112 1n27_A) ( 6009 1ug1_A) 0.7143 0.8333 1.6731 ( 0 9 10) 0 0.8571 0.9999 7 6 ( 4112 1n27_A) ( 6325 1vyn_A) 0.7143 0.4167 1.6862 ( 0 9 10) 0 0.7143 0.4167 7 12 ( 4112 1n27_A) ( 6391 2ahj_B) 0.1993 0.1920 7.3723 ( 2 4 6) 0 0.7134 0.3846 7 13 ( 4112 1n27_A) ( 6604 3vub ) 0.6291 0.5758 8.9944 ( 1 8 10) 0 0.6567 0.5930 7 8 -------------------------------------------------------------------------------------------------------------------------