------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3892 1m9s_A) ( 251 1azp_A) 0.6665 0.6665 3.9722 ( 0 4 6) 0 0.6665 0.6665 6 6 ( 3892 1m9s_A) ( 340 1bb9 ) 0.8333 0.8333 2.5900 ( 0 8 10) 0 0.8333 0.8333 6 6 ( 3892 1m9s_A) ( 414 1bkb ) 0.3878 0.3789 8.9747 ( 1 4 6) 0 0.3878 0.3789 6 7 ( 3892 1m9s_A) ( 501 1c0m_A) 0.8332 0.8332 3.0923 ( 0 7 10) 0 0.8332 0.8332 6 6 ( 3892 1m9s_A) ( 1648 1fx7_A) 0.8331 0.7142 3.3855 ( 0 8 10) 0 0.8331 0.7142 6 7 ( 3892 1m9s_A) ( 1715 1g3s_A) 0.8331 0.7142 3.3686 ( 0 8 10) 0 0.8331 0.7142 6 7 ( 3892 1m9s_A) ( 2073 1h3z_A) 0.8331 0.6249 3.6176 ( 0 8 10) 0 0.8331 0.6249 6 8 ( 3892 1m9s_A) ( 2334 1hyo_A) nil ( 3892 1m9s_A) ( 2363 1i1j_A) 0.2487 0.2462 11.6531 ( 2 5 6) 0 0.8328 0.6249 6 8 ( 3892 1m9s_A) ( 2581 1ire_B) 0.4666 0.2786 6.6662 ( 1 5 6) 0 0.4666 0.2786 6 14 ( 3892 1m9s_A) ( 2900 1jj2_A) 0.6857 0.5773 4.9299 ( 1 8 10) 0 0.6857 0.5773 6 8 ( 3892 1m9s_A) ( 2913 1jj2_P) 0.8331 0.8331 3.5328 ( 0 8 10) 0 0.8331 0.8331 6 6 ( 3892 1m9s_A) ( 2916 1jj2_S) 0.8327 0.4545 4.5031 ( 0 8 10) 0 0.8327 0.4545 6 11 ( 3892 1m9s_A) ( 3300 1khc_A) nil ( 3892 1m9s_A) ( 3303 1khi_A) 0.6655 0.6655 6.9203 ( 0 3 6) 0 0.6655 0.6655 6 6 ( 3892 1m9s_A) ( 3326 1kjw_A) 0.6859 0.6315 3.9456 ( 1 8 10) 0 0.6859 0.6315 6 7 ( 3892 1m9s_A) ( 3693 1lpl_A) 0.8332 0.8332 3.1662 ( 0 8 10) 0 0.8332 0.8332 6 6 ( 3892 1m9s_A) ( 3783 1m1f_A) 0.8326 0.5555 4.7205 ( 0 8 10) 0 0.8326 0.5555 6 9 ( 3892 1m9s_A) ( 3838 1m4z_A) 0.6623 0.2353 9.6766 ( 0 4 6) 0 0.6623 0.2919 6 17 ( 3892 1m9s_A) ( 3892 1m9s_A) 1.0000 1.0000 0.0000 ( 0 13 15) 0 1.0000 1.0000 6 6 ( 3892 1m9s_A) ( 4112 1n27_A) 0.8333 0.7143 2.2846 ( 0 8 10) 0 0.8333 0.7143 6 7 ( 3892 1m9s_A) ( 4209 1ne8_A) 0.6662 0.4000 5.5524 ( 0 4 6) 0 0.6662 0.4000 6 10 ( 3892 1m9s_A) ( 4236 1ng2_A) 0.8333 0.7143 2.1704 ( 0 8 10) 0 0.8333 0.7143 6 7 ( 3892 1m9s_A) ( 4665 1oi1_A) nil ( 3892 1m9s_A) ( 4842 1oz2_A) nil ( 3892 1m9s_A) ( 4843 1oz2_A) nil ( 3892 1m9s_A) ( 5014 1pht ) 0.1665 0.1664 8.1790 ( 3 5 6) 0 0.2488 0.2478 6 7 ( 3892 1m9s_A) ( 5548 1r4k_A) 0.4664 0.3418 8.1116 ( 1 5 6) 0 0.6238 0.4932 6 11 ( 3892 1m9s_A) ( 5668 1rl2_A) 0.6650 0.5706 7.6441 ( 0 5 6) 0 0.6650 0.5943 6 7 ( 3892 1m9s_A) ( 5805 1sf9_A) 0.8332 0.6250 3.2965 ( 0 8 10) 0 0.8332 0.6250 6 8 ( 3892 1m9s_A) ( 5957 1ub4_A) 0.8330 0.5000 3.8299 ( 0 8 10) 0 0.8330 0.5000 6 10 ( 3892 1m9s_A) ( 6009 1ug1_A) 0.8333 0.8333 2.5301 ( 0 8 10) 0 0.8333 0.8333 6 6 ( 3892 1m9s_A) ( 6325 1vyn_A) 0.8333 0.4167 2.6887 ( 0 8 10) 0 0.8333 0.4167 6 12 ( 3892 1m9s_A) ( 6391 2ahj_B) 0.1996 0.1920 7.2735 ( 2 4 6) 0 0.8317 0.3846 6 13 ( 3892 1m9s_A) ( 6604 3vub ) 0.8331 0.6249 3.6007 ( 0 8 10) 0 0.8331 0.6249 6 8 -------------------------------------------------------------------------------------------------------------------------