------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3838 1m4z_A) ( 251 1azp_A) 0.2353 0.6652 7.4096 ( 0 2 6) 0 0.2353 0.6652 17 6 ( 3838 1m4z_A) ( 340 1bb9 ) 0.2941 0.8326 4.7467 ( 0 10 10) 0 0.2941 0.8326 17 6 ( 3838 1m4z_A) ( 414 1bkb ) 0.3516 0.7688 4.9740 ( 1 10 15) 0 0.3516 0.7688 17 7 ( 3838 1m4z_A) ( 501 1c0m_A) 0.2941 0.8321 5.3615 ( 0 8 10) 0 0.3528 0.9804 17 6 ( 3838 1m4z_A) ( 1648 1fx7_A) 0.2353 0.5697 9.3577 ( 0 4 6) 0 0.2941 0.7136 17 7 ( 3838 1m4z_A) ( 1715 1g3s_A) 0.2353 0.5699 9.0203 ( 0 4 6) 0 0.2941 0.7135 17 7 ( 3838 1m4z_A) ( 2073 1h3z_A) 0.2353 0.4996 7.3710 ( 0 3 6) 0 0.2353 0.4996 17 8 ( 3838 1m4z_A) ( 2334 1hyo_A) 0.2325 0.3419 5.9592 ( 1 5 6) 0 0.3222 0.3984 17 11 ( 3838 1m4z_A) ( 2363 1i1j_A) 0.2941 0.6249 4.4498 ( 0 9 10) 0 0.3456 0.6249 17 8 ( 3838 1m4z_A) ( 2581 1ire_B) 0.2352 0.2856 12.1423 ( 0 6 6) 0 0.2497 0.2857 17 14 ( 3838 1m4z_A) ( 2900 1jj2_A) 0.3053 0.3693 7.2629 ( 4 15 15) 0 0.3053 0.6247 17 8 ( 3838 1m4z_A) ( 2913 1jj2_P) 0.2325 0.4662 9.0050 ( 1 5 6) 0 0.2437 0.6661 17 6 ( 3838 1m4z_A) ( 2916 1jj2_S) 0.2353 0.3635 8.5106 ( 0 4 6) 0 0.3288 0.4190 17 11 ( 3838 1m4z_A) ( 3300 1khc_A) 0.2933 0.5369 5.5988 ( 1 9 10) 0 0.2941 0.5555 17 9 ( 3838 1m4z_A) ( 3303 1khi_A) 0.2287 0.3879 7.8647 ( 1 4 6) 0 0.2287 0.3879 17 6 ( 3838 1m4z_A) ( 3326 1kjw_A) 0.2353 0.5709 6.9863 ( 0 3 6) 0 0.2353 0.5709 17 7 ( 3838 1m4z_A) ( 3693 1lpl_A) 0.2353 0.6647 7.9588 ( 0 5 6) 0 0.2918 0.6647 17 6 ( 3838 1m4z_A) ( 3783 1m1f_A) 0.3457 0.5533 4.7036 ( 2 13 15) 0 0.3457 0.5533 17 9 ( 3838 1m4z_A) ( 3838 1m4z_A) 1.0000 1.0000 0.0000 ( 0 123 136) 0 1.0000 1.0000 17 17 ( 3838 1m4z_A) ( 3892 1m9s_A) 0.2353 0.6623 9.6766 ( 0 4 6) 0 0.2941 0.8320 17 6 ( 3838 1m4z_A) ( 4112 1n27_A) 0.2941 0.7140 4.2958 ( 0 9 10) 0 0.3519 0.7874 17 7 ( 3838 1m4z_A) ( 4209 1ne8_A) 0.2353 0.3999 6.1742 ( 0 4 6) 0 0.3473 0.5376 17 10 ( 3838 1m4z_A) ( 4236 1ng2_A) 0.2353 0.5710 6.6242 ( 0 4 6) 0 0.2941 0.7137 17 7 ( 3838 1m4z_A) ( 4665 1oi1_A) 0.2339 0.5282 8.0523 ( 1 6 6) 0 0.2339 0.5282 17 6 ( 3838 1m4z_A) ( 4842 1oz2_A) 0.2339 0.5275 9.7401 ( 1 6 6) 0 0.2339 0.5275 17 6 ( 3838 1m4z_A) ( 4843 1oz2_A) 0.2325 0.4659 10.1469 ( 1 5 6) 0 0.2325 0.4659 17 6 ( 3838 1m4z_A) ( 5014 1pht ) 0.2758 0.3905 8.8679 ( 2 8 10) 0 0.3456 0.6566 17 7 ( 3838 1m4z_A) ( 5548 1r4k_A) 0.4114 0.6328 6.0317 ( 1 17 21) 0 0.4114 0.6328 17 11 ( 3838 1m4z_A) ( 5668 1rl2_A) 0.2036 0.2477 8.5889 ( 2 5 6) 0 0.2036 0.2477 17 7 ( 3838 1m4z_A) ( 5805 1sf9_A) 0.2325 0.4201 8.9506 ( 1 5 6) 0 0.2758 0.4998 17 8 ( 3838 1m4z_A) ( 5957 1ub4_A) 0.2353 0.3999 6.1763 ( 0 4 6) 0 0.3695 0.4091 17 10 ( 3838 1m4z_A) ( 6009 1ug1_A) 0.2353 0.6655 7.0146 ( 0 3 6) 0 0.2353 0.6659 17 6 ( 3838 1m4z_A) ( 6325 1vyn_A) 0.3529 0.5000 3.5555 ( 0 13 15) 0 0.3529 0.5000 17 12 ( 3838 1m4z_A) ( 6391 2ahj_B) 0.2353 0.3076 8.3235 ( 0 4 6) 0 0.2955 0.3699 17 13 ( 3838 1m4z_A) ( 6604 3vub ) 0.2353 0.4999 5.3874 ( 0 4 6) 0 0.2353 0.4999 17 8 -------------------------------------------------------------------------------------------------------------------------