------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3783 1m1f_A) ( 251 1azp_A) 0.4438 0.6620 9.8835 ( 0 5 6) 1 0.4438 0.6620 9 6 ( 3783 1m1f_A) ( 340 1bb9 ) 0.5553 0.8318 5.6594 ( 0 10 10) 0 0.5555 0.8332 9 6 ( 3783 1m1f_A) ( 414 1bkb ) 0.4444 0.5712 5.5386 ( 0 4 6) 0 0.4444 0.5712 9 7 ( 3783 1m1f_A) ( 501 1c0m_A) 0.4441 0.6639 8.6310 ( 0 6 6) 0 0.4441 0.6639 9 6 ( 3783 1m1f_A) ( 1648 1fx7_A) 0.4441 0.5701 8.7356 ( 0 4 6) 0 0.5555 0.7142 9 7 ( 3783 1m1f_A) ( 1715 1g3s_A) 0.4441 0.5703 8.3162 ( 0 4 6) 0 0.6552 0.8195 9 7 ( 3783 1m1f_A) ( 2073 1h3z_A) 0.5553 0.6245 6.1573 ( 0 8 10) 0 0.6541 0.7279 9 8 ( 3783 1m1f_A) ( 2334 1hyo_A) 0.4111 0.3801 9.3677 ( 2 9 10) 0 0.5544 0.4541 9 11 ( 3783 1m1f_A) ( 2363 1i1j_A) 0.5555 0.6248 4.6698 ( 0 10 10) 0 0.6579 0.7346 9 8 ( 3783 1m1f_A) ( 2581 1ire_B) 0.5269 0.3536 6.8589 ( 1 8 10) 0 0.5269 0.3536 9 14 ( 3783 1m1f_A) ( 2900 1jj2_A) 0.3521 0.3665 12.2520 ( 1 4 6) 0 0.6583 0.7352 9 8 ( 3783 1m1f_A) ( 2913 1jj2_P) 0.1980 0.1996 9.1199 ( 3 6 6) 0 0.6549 0.9238 9 6 ( 3783 1m1f_A) ( 2916 1jj2_S) 0.4443 0.3636 6.5117 ( 0 6 6) 0 0.5553 0.4544 9 11 ( 3783 1m1f_A) ( 3300 1khc_A) 0.3937 0.3937 4.4961 ( 1 5 6) 0 0.5364 0.5364 9 9 ( 3783 1m1f_A) ( 3303 1khi_A) 0.3526 0.3880 5.3784 ( 1 4 6) 0 0.4444 0.6666 9 6 ( 3783 1m1f_A) ( 3326 1kjw_A) 0.4444 0.5714 3.6020 ( 0 6 6) 0 0.5360 0.6541 9 7 ( 3783 1m1f_A) ( 3693 1lpl_A) 0.5554 0.8322 5.2514 ( 0 8 10) 0 0.5554 0.8322 9 6 ( 3783 1m1f_A) ( 3783 1m1f_A) 1.0000 1.0000 0.0000 ( 0 31 36) 0 1.0000 1.0000 9 9 ( 3783 1m1f_A) ( 3838 1m4z_A) 0.5533 0.3457 4.7036 ( 2 13 15) 0 0.5533 0.3457 9 17 ( 3783 1m1f_A) ( 3892 1m9s_A) 0.5555 0.8326 4.7205 ( 0 8 10) 0 0.5555 0.8326 9 6 ( 3783 1m1f_A) ( 4112 1n27_A) 0.5551 0.7126 6.9675 ( 0 9 10) 0 0.5551 0.7126 9 7 ( 3783 1m1f_A) ( 4209 1ne8_A) 0.8840 0.7971 1.9061 ( 1 23 28) 0 0.8840 0.7971 9 10 ( 3783 1m1f_A) ( 4236 1ng2_A) 0.4444 0.5711 6.0511 ( 0 4 6) 0 0.5555 0.7140 9 7 ( 3783 1m1f_A) ( 4665 1oi1_A) 0.4444 0.6664 4.9627 ( 0 5 6) 0 0.4444 0.6666 9 6 ( 3783 1m1f_A) ( 4842 1oz2_A) 0.4444 0.6664 4.9363 ( 0 5 6) 0 0.4444 0.6666 9 6 ( 3783 1m1f_A) ( 4843 1oz2_A) 0.4441 0.6640 8.5865 ( 0 5 6) 0 0.4444 0.6666 9 6 ( 3783 1m1f_A) ( 5014 1pht ) 0.6664 0.8564 4.5692 ( 0 13 15) 0 0.6664 0.8564 9 7 ( 3783 1m1f_A) ( 5548 1r4k_A) 0.4444 0.3636 5.0500 ( 0 3 6) 0 0.4444 0.3636 9 11 ( 3783 1m1f_A) ( 5668 1rl2_A) 0.3936 0.4454 6.1835 ( 1 5 6) 0 0.6554 0.8203 9 7 ( 3783 1m1f_A) ( 5805 1sf9_A) 0.1980 0.1987 8.8798 ( 3 6 6) 0 0.1980 0.1987 9 8 ( 3783 1m1f_A) ( 5957 1ub4_A) 0.9965 0.8979 1.2657 ( 1 29 36) 0 0.9965 0.8979 9 10 ( 3783 1m1f_A) ( 6009 1ug1_A) 0.4437 0.6613 10.2297 ( 0 5 6) 0 0.4437 0.6613 9 6 ( 3783 1m1f_A) ( 6325 1vyn_A) 0.4442 0.3333 7.5748 ( 0 6 6) 0 0.4442 0.3333 9 12 ( 3783 1m1f_A) ( 6391 2ahj_B) 0.6547 0.4596 6.7496 ( 1 13 15) 0 0.6551 0.4596 9 13 ( 3783 1m1f_A) ( 6604 3vub ) 0.7776 0.8747 3.4577 ( 0 18 21) 0 0.7776 0.8747 9 8 -------------------------------------------------------------------------------------------------------------------------