------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3693 1lpl_A) ( 251 1azp_A) 0.6662 0.6662 5.6173 ( 0 4 6) 0 0.6665 0.6665 6 6 ( 3693 1lpl_A) ( 340 1bb9 ) 0.8333 0.8333 2.5362 ( 0 8 10) 0 0.8333 0.8333 6 6 ( 3693 1lpl_A) ( 414 1bkb ) nil ( 3693 1lpl_A) ( 501 1c0m_A) 0.6648 0.6648 7.8148 ( 0 5 6) 0 0.6648 0.6648 6 6 ( 3693 1lpl_A) ( 1648 1fx7_A) 0.8333 0.7143 2.3440 ( 0 8 10) 0 0.8333 0.7143 6 7 ( 3693 1lpl_A) ( 1715 1g3s_A) 0.5287 0.4916 6.3366 ( 1 6 6) 0 0.8333 0.7142 6 7 ( 3693 1lpl_A) ( 2073 1h3z_A) 0.6655 0.4997 7.0077 ( 0 5 6) 0 0.6655 0.4997 6 8 ( 3693 1lpl_A) ( 2334 1hyo_A) 0.3880 0.3192 5.8927 ( 1 4 6) 2 0.3880 0.3192 6 11 ( 3693 1lpl_A) ( 2363 1i1j_A) 0.8333 0.6250 1.8558 ( 0 8 10) 0 0.8333 0.6250 6 8 ( 3693 1lpl_A) ( 2581 1ire_B) 0.8331 0.3571 3.6209 ( 0 7 10) 0 0.8722 0.4260 6 14 ( 3693 1lpl_A) ( 2900 1jj2_A) 0.6661 0.4999 5.7208 ( 0 5 6) 0 0.6665 0.5000 6 8 ( 3693 1lpl_A) ( 2913 1jj2_P) 0.1665 0.1665 8.4851 ( 3 5 6) 0 0.6326 0.6326 6 6 ( 3693 1lpl_A) ( 2916 1jj2_S) 0.5287 0.3523 5.9244 ( 1 6 6) 0 0.6327 0.4363 6 11 ( 3693 1lpl_A) ( 3300 1khc_A) 0.6666 0.4444 3.3948 ( 0 5 6) 0 0.6666 0.4444 6 9 ( 3693 1lpl_A) ( 3303 1khi_A) nil ( 3693 1lpl_A) ( 3326 1kjw_A) 0.6626 0.5696 9.4986 ( 0 5 6) 0 0.6626 0.5696 6 7 ( 3693 1lpl_A) ( 3693 1lpl_A) 1.0000 1.0000 0.0000 ( 0 12 15) 0 1.0000 1.0000 6 6 ( 3693 1lpl_A) ( 3783 1m1f_A) 0.8322 0.5554 5.2514 ( 0 8 10) 0 0.8322 0.5554 6 9 ( 3693 1lpl_A) ( 3838 1m4z_A) 0.6647 0.2353 7.9588 ( 0 5 6) 0 0.6647 0.2918 6 17 ( 3693 1lpl_A) ( 3892 1m9s_A) 0.8332 0.8332 3.1662 ( 0 8 10) 0 0.8332 0.8332 6 6 ( 3693 1lpl_A) ( 4112 1n27_A) nil ( 3693 1lpl_A) ( 4209 1ne8_A) 0.6665 0.4000 4.4440 ( 0 5 6) 0 0.6665 0.4000 6 10 ( 3693 1lpl_A) ( 4236 1ng2_A) nil ( 3693 1lpl_A) ( 4665 1oi1_A) 0.6520 0.6520 13.2475 ( 0 6 6) 0 0.6520 0.6520 6 6 ( 3693 1lpl_A) ( 4842 1oz2_A) nil ( 3693 1lpl_A) ( 4843 1oz2_A) nil ( 3693 1lpl_A) ( 5014 1pht ) 0.8331 0.7142 3.5801 ( 0 8 10) 0 0.8331 0.7142 6 7 ( 3693 1lpl_A) ( 5548 1r4k_A) 0.4665 0.3418 7.4519 ( 1 5 6) 0 0.4665 0.3418 6 11 ( 3693 1lpl_A) ( 5668 1rl2_A) 0.2488 0.2477 9.3696 ( 2 5 6) 0 0.6665 0.5713 6 7 ( 3693 1lpl_A) ( 5805 1sf9_A) 0.2488 0.2462 5.8444 ( 2 5 6) 0 0.2488 0.2462 6 8 ( 3693 1lpl_A) ( 5957 1ub4_A) 0.8325 0.4999 4.7839 ( 0 8 10) 0 0.8325 0.4999 6 10 ( 3693 1lpl_A) ( 6009 1ug1_A) 0.8333 0.8333 1.8670 ( 0 8 10) 0 0.8333 0.8333 6 6 ( 3693 1lpl_A) ( 6325 1vyn_A) 0.8328 0.4166 4.3598 ( 0 8 10) 0 0.8328 0.4390 6 12 ( 3693 1lpl_A) ( 6391 2ahj_B) 0.8333 0.3846 1.6699 ( 0 8 10) 0 0.8333 0.3846 6 13 ( 3693 1lpl_A) ( 6604 3vub ) 0.6666 0.5000 3.5906 ( 0 5 6) 0 0.6666 0.5000 6 8 -------------------------------------------------------------------------------------------------------------------------