------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [340, 251]: Comparing 1bb9 and 1azp_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 8 (3 H + 5 S) secondary structure elements in 1azp_A, of which 6 satisfy the size requirements. 1.50050 [ 1.50050] ((1 . 1) (2 . 2) (4 . 5) (7 . 6)) 4.585 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6664 [and 1/min{score2}: 0.6664] [340, 340]: Comparing 1bb9 and 1bb9, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (4 . 4) (5 . 5) (7 . 7) (9 . 9)) 0.000 {0/14:15} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [340, 414]: Comparing 1bb9 and 1bkb, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 15 (3 H + 12 S) secondary structure elements in 1bkb, of which 7 satisfy the size requirements. 2.14283 [ 2.24496] ((1 . 1) (2 . 4) (4 . 6) (9 . 8)) 6.108 {1/5:6} B:0 2.87930 [ 2.89764] ((1 . 8) (2 . 4) (4 . 6) (7 . 5) (9 . 1)) 5.864 {2/7:10} B:3 SIMILARITY (1/min{score1}): 0.4667 [and 1/min{score2}: 0.4454] [340, 501]: Comparing 1bb9 and 1c0m_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 19 (8 H + 11 S) secondary structure elements in 1c0m_A, of which 6 satisfy the size requirements. 1.50270 [ 1.50270] ((1 . 13) (2 . 14) (4 . 16) (7 . 19)) 6.993 {0/6:6} B:0 1.50026 [ 1.50026] ((1 . 14) (2 . 13) (4 . 19) (7 . 16)) 3.901 {0/6:6} B:2 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.6666] [340, 1648]: Comparing 1bb9 and 1fx7_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 19 (11 H + 8 S) secondary structure elements in 1fx7_A, of which 7 satisfy the size requirements. 1.20008 [ 1.40005] ((1 . 12) (2 . 15) (4 . 16) (7 . 17) (9 . 19)) 2.441 {0/9:10} B:0 1.50004 [ 1.75003] ((1 . 12) (2 . 15) (4 . 16) (9 . 19)) 2.471 {0/6:6} B:0 5.01012 [ 5.01868] ((1 . 12) (4 . 15) (7 . 17) (9 . 19)) 5.294 {3/6:6} B:0 SIMILARITY (1/min{score1}): 0.8333 [and 1/min{score2}: 0.7143] [340, 1715]: Comparing 1bb9 and 1g3s_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 19 (11 H + 8 S) secondary structure elements in 1g3s_A, of which 7 satisfy the size requirements. NO SIMILARITY! [340, 2073]: Comparing 1bb9 and 1h3z_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 11 (6 H + 5 S) secondary structure elements in 1h3z_A, of which 8 satisfy the size requirements. 1.20012 [ 1.60005] ((1 . 1) (2 . 2) (4 . 5) (7 . 6) (9 . 8)) 2.718 {0/10:10} B:0 1.50156 [ 2.00066] ((1 . 1) (2 . 2) (4 . 5) (7 . 8)) 6.099 {0/6:6} B:0 1.89261 [ 2.20800] ((1 . 2) (2 . 5) (4 . 8) (5 . 9)) 7.644 {1/6:6} B:0 1.89300 [ 2.20824] ((1 . 2) (2 . 5) (4 . 6) (5 . 9)) 8.000 {1/6:6} B:0 3.36714 [ 3.43659] ((1 . 2) (2 . 6) (4 . 8) (5 . 9)) 6.248 {2/6:6} B:0 SIMILARITY (1/min{score1}): 0.8332 [and 1/min{score2}: 0.6250] [340, 2334]: Comparing 1bb9 and 1hyo_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 42 (16 H + 26 S) secondary structure elements in 1hyo_A, of which 11 satisfy the size requirements. 1.05960 [ 1.84382] ((1 . 1) (2 . 2) (4 . 3) (5 . 4) (7 . 10) (9 . 11)) 2.083 {1/14:15} B:0 2.16785 [ 2.38550] ((1 . 1) (2 . 2) (4 . 3) (5 . 5) (7 . 10) (9 . 11)) 2.992 {3/14:15} B:0 SIMILARITY (1/min{score1}): 0.9437 [and 1/min{score2}: 0.5424] [340, 2363]: Comparing 1bb9 and 1i1j_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 9 (2 H + 7 S) secondary structure elements in 1i1j_A, of which 8 satisfy the size requirements. 1.20005 [ 1.60002] ((1 . 2) (2 . 3) (4 . 5) (7 . 6) (9 . 8)) 2.176 {0/9:10} B:0 1.50126 [ 2.00053] ((2 . 2) (4 . 3) (5 . 4) (7 . 5)) 5.781 {0/4:6} B:0 5.01020 [ 5.03180] ((1 . 3) (2 . 5) (4 . 6) (7 . 9)) 7.631 {3/6:6} B:0 1.47000 [ 1.73920] ((2 . 3) (4 . 5) (5 . 4) (7 . 6) (9 . 8)) 10.030 {1/8:10} B:1 1.50028 [ 2.00012] ((1 . 3) (2 . 5) (4 . 6) (9 . 1)) 3.957 {0/6:6} B:1 SIMILARITY (1/min{score1}): 0.8333 [and 1/min{score2}: 0.6250] [340, 2581]: Comparing 1bb9 and 1ire_B, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 16 (10 H + 6 S) secondary structure elements in 1ire_B, of which 14 satisfy the size requirements. 1.20180 [ 2.80014] ((1 . 8) (2 . 10) (4 . 12) (7 . 14) (9 . 16)) 5.350 {0/8:10} B:0 1.50028 [ 3.50002] ((1 . 8) (4 . 12) (7 . 14) (9 . 16)) 3.952 {0/5:6} B:0 2.53260 [ 3.16648] ((1 . 8) (4 . 12) (5 . 13) (7 . 14) (9 . 16)) 4.116 {2/8:10} B:0 7.50306 [ 7.58744] ((1 . 10) (2 . 12) (7 . 16) (9 . 14)) 8.957 {3/4:6} B:1 SIMILARITY (1/min{score1}): 0.8321 [and 1/min{score2}: 0.3571] [340, 2900]: Comparing 1bb9 and 1jj2_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 19 (7 H + 12 S) secondary structure elements in 1jj2_A, of which 8 satisfy the size requirements. 1.50070 [ 2.00030] ((1 . 9) (2 . 10) (4 . 11) (7 . 13)) 4.996 {0/6:6} B:0 3.36727 [ 3.43671] ((1 . 10) (2 . 11) (4 . 13) (5 . 14)) 7.281 {2/6:6} B:0 5.01019 [ 5.03179] ((1 . 9) (2 . 10) (4 . 12) (7 . 13)) 7.496 {3/6:6} B:0 1.50291 [ 2.00123] ((1 . 12) (4 . 13) (7 . 9) (9 . 11)) 7.129 {0/6:6} B:1 4.45038 [ 4.46303] ((2 . 9) (4 . 13) (5 . 14) (7 . 8) (9 . 10)) 5.503 {4/9:10} B:1 SIMILARITY (1/min{score1}): 0.8309 [and 1/min{score2}: 0.6244] [340, 2913]: Comparing 1bb9 and 1jj2_P, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 8 (3 H + 5 S) secondary structure elements in 1jj2_P, of which 6 satisfy the size requirements. NO SIMILARITY! [340, 2916]: Comparing 1bb9 and 1jj2_S, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 14 (6 H + 8 S) secondary structure elements in 1jj2_S, of which 11 satisfy the size requirements. 1.20101 [ 2.20016] ((1 . 7) (2 . 8) (4 . 9) (7 . 11) (9 . 13)) 4.626 {0/10:10} B:0 1.50062 [ 2.75010] ((2 . 8) (4 . 9) (7 . 11) (9 . 13)) 4.847 {0/6:6} B:0 2.14241 [ 2.92497] ((4 . 4) (5 . 5) (7 . 6) (9 . 7)) 4.186 {1/5:6} B:0 4.01998 [ 4.20711] ((2 . 4) (4 . 6) (7 . 8) (9 . 9)) 8.788 {2/5:6} B:0 3.36700 [ 3.66614] ((1 . 8) (4 . 13) (7 . 6) (9 . 9)) 3.214 {2/6:6} B:1 SIMILARITY (1/min{score1}): 0.8326 [and 1/min{score2}: 0.4545] [340, 3300]: Comparing 1bb9 and 1khc_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 12 (7 H + 5 S) secondary structure elements in 1khc_A, of which 9 satisfy the size requirements. 1.50003 [ 2.25001] ((1 . 1) (2 . 2) (4 . 4) (7 . 5)) 2.305 {0/6:6} B:0 2.14421 [ 2.54124] ((1 . 2) (2 . 4) (4 . 5) (5 . 9)) 8.396 {1/5:6} B:0 1.50239 [ 2.25071] ((2 . 2) (4 . 4) (5 . 3) (7 . 5)) 6.788 {0/5:6} B:1 SIMILARITY (1/min{score1}): 0.6667 [and 1/min{score2}: 0.4444] [340, 3303]: Comparing 1bb9 and 1khi_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 16 (3 H + 13 S) secondary structure elements in 1khi_A, of which 6 satisfy the size requirements. NO SIMILARITY! [340, 3326]: Comparing 1bb9 and 1kjw_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 24 (9 H + 15 S) secondary structure elements in 1kjw_A, of which 7 satisfy the size requirements. 1.32430 [ 1.48352] ((1 . 1) (2 . 3) (4 . 4) (7 . 5) (9 . 7)) 3.418 {1/10:10} B:0 1.50000 [ 1.75000] ((1 . 1) (2 . 3) (4 . 4) (7 . 5)) 0.857 {0/6:6} B:0 3.36725 [ 3.39517] ((1 . 3) (2 . 4) (4 . 5) (9 . 7)) 7.156 {2/6:6} B:0 5.01010 [ 5.01866] ((1 . 3) (2 . 4) (4 . 5) (5 . 6)) 4.100 {3/6:6} B:0 SIMILARITY (1/min{score1}): 0.7551 [and 1/min{score2}: 0.6741] [340, 3693]: Comparing 1bb9 and 1lpl_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 9 (2 H + 7 S) secondary structure elements in 1lpl_A, of which 6 satisfy the size requirements. 1.20009 [ 1.20009] ((1 . 2) (2 . 3) (4 . 4) (7 . 7) (9 . 9)) 2.536 {0/8:10} B:0 5.01011 [ 5.01011] ((1 . 2) (2 . 4) (7 . 7) (9 . 9)) 4.968 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.8333 [and 1/min{score2}: 0.8333] [340, 3783]: Comparing 1bb9 and 1m1f_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 10 (3 H + 7 S) secondary structure elements in 1m1f_A, of which 9 satisfy the size requirements. 1.20226 [ 1.80067] ((1 . 1) (2 . 2) (4 . 4) (7 . 6) (9 . 9)) 5.659 {0/10:10} B:0 1.50086 [ 2.25025] ((2 . 1) (4 . 2) (7 . 4) (9 . 5)) 5.252 {0/6:6} B:0 6.67098 [ 6.68824] ((1 . 2) (2 . 4) (7 . 6) (9 . 9)) 7.914 {4/6:6} B:0 1.20014 [ 1.80004] ((1 . 4) (2 . 2) (4 . 1) (7 . 9) (9 . 6)) 2.820 {0/10:10} B:3 SIMILARITY (1/min{score1}): 0.8332 [and 1/min{score2}: 0.5555] [340, 3838]: Comparing 1bb9 and 1m4z_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 21 (9 H + 12 S) secondary structure elements in 1m4z_A, of which 17 satisfy the size requirements. 1.20112 [ 3.40005] ((1 . 5) (2 . 6) (4 . 8) (7 . 14) (9 . 16)) 4.747 {0/10:10} B:0 1.50277 [ 4.25012] ((1 . 2) (2 . 3) (4 . 5) (7 . 6)) 7.039 {0/3:6} B:0 2.57841 [ 4.37209] ((2 . 2) (4 . 5) (7 . 6) (9 . 7)) 8.328 {1/4:6} B:0 3.36826 [ 4.60554] ((1 . 3) (2 . 6) (4 . 8) (5 . 10)) 10.623 {2/6:6} B:0 5.01025 [ 5.55370] ((1 . 2) (2 . 3) (7 . 7) (9 . 8)) 8.398 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.8326 [and 1/min{score2}: 0.2941] [340, 3892]: Comparing 1bb9 and 1m9s_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 50 (15 H + 35 S) secondary structure elements in 1m9s_A, of which 6 satisfy the size requirements. 1.20010 [ 1.20010] ((1 . 31) (2 . 35) (4 . 37) (7 . 38) (9 . 39)) 2.590 {0/8:10} B:0 1.50006 [ 1.50006] ((1 . 31) (4 . 37) (7 . 38) (9 . 39)) 2.754 {0/4:6} B:0 6.00586 [ 6.00586] ((1 . 31) (4 . 35) (7 . 38) (9 . 39)) 5.181 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.8333 [and 1/min{score2}: 0.8333] [340, 4112]: Comparing 1bb9 and 1n27_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 8 (3 H + 5 S) secondary structure elements in 1n27_A, of which 7 satisfy the size requirements. 1.20002 [ 1.40001] ((1 . 1) (2 . 2) (4 . 3) (7 . 4) (9 . 6)) 1.715 {0/9:10} B:0 1.50001 [ 1.75001] ((2 . 2) (4 . 3) (7 . 4) (9 . 6)) 1.760 {0/6:6} B:0 1.50105 [ 1.75066] ((1 . 1) (2 . 2) (4 . 3) (7 . 6)) 5.518 {0/5:6} B:0 2.57778 [ 2.63859] ((1 . 2) (2 . 3) (4 . 6) (5 . 7)) 6.669 {1/4:6} B:0 6.00588 [ 6.01086] ((1 . 2) (2 . 4) (4 . 6) (5 . 7)) 6.495 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.8333 [and 1/min{score2}: 0.7143] [340, 4209]: Comparing 1bb9 and 1ne8_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 11 (4 H + 7 S) secondary structure elements in 1ne8_A, of which 10 satisfy the size requirements. 1.20016 [ 2.00003] ((1 . 1) (2 . 2) (4 . 4) (7 . 8) (9 . 10)) 2.916 {0/9:10} B:0 1.50050 [ 2.50011] ((1 . 1) (4 . 5) (5 . 6) (7 . 7)) 4.582 {0/5:6} B:0 1.50066 [ 2.50014] ((2 . 1) (4 . 2) (7 . 4) (9 . 5)) 4.920 {0/6:6} B:0 2.14245 [ 2.72412] ((2 . 1) (4 . 2) (5 . 3) (7 . 4)) 4.513 {1/5:6} B:0 2.14323 [ 2.72450] ((4 . 5) (5 . 6) (7 . 8) (9 . 10)) 7.029 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.8332 [and 1/min{score2}: 0.5385] [340, 4236]: Comparing 1bb9 and 1ng2_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 13 (5 H + 8 S) secondary structure elements in 1ng2_A, of which 7 satisfy the size requirements. 1.50079 [ 1.75050] ((1 . 5) (2 . 6) (4 . 7) (7 . 10)) 5.145 {0/6:6} B:0 5.01018 [ 5.01874] ((1 . 5) (2 . 6) (4 . 8) (7 . 10)) 7.295 {3/6:6} B:0 SIMILARITY (1/min{score1}): 0.6663 [and 1/min{score2}: 0.5713] [340, 4665]: Comparing 1bb9 and 1oi1_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 16 (6 H + 10 S) secondary structure elements in 1oi1_A, of which 6 satisfy the size requirements. 1.50005 [ 1.50005] ((1 . 11) (2 . 12) (4 . 13) (7 . 14)) 2.595 {0/6:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.6666] [340, 4842]: Comparing 1bb9 and 1oz2_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 32 (15 H + 17 S) secondary structure elements in 1oz2_A, of which 6 satisfy the size requirements. 1.50006 [ 1.50006] ((1 . 4) (2 . 5) (4 . 6) (7 . 8)) 2.742 {0/6:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.6666] [340, 4843]: Comparing 1bb9 and 1oz2_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 32 (15 H + 17 S) secondary structure elements in 1oz2_A, of which 6 satisfy the size requirements. 1.50006 [ 1.50006] ((1 . 15) (2 . 16) (4 . 17) (7 . 19)) 2.753 {0/6:6} B:0 4.01979 [ 4.01979] ((1 . 15) (2 . 16) (4 . 17) (5 . 21)) 7.163 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.6666 [and 1/min{score2}: 0.6666] [340, 5014]: Comparing 1bb9 and 1pht, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 9 (4 H + 5 S) secondary structure elements in 1pht, of which 7 satisfy the size requirements. 1.20016 [ 1.40010] ((1 . 1) (2 . 2) (4 . 6) (7 . 7) (9 . 9)) 2.920 {0/10:10} B:0 4.01972 [ 4.03624] ((1 . 1) (2 . 2) (5 . 4) (9 . 7)) 6.313 {2/5:6} B:0 1.38054 [ 1.52443] ((1 . 6) (2 . 2) (4 . 1) (5 . 4) (9 . 7)) 6.906 {1/9:10} B:2 SIMILARITY (1/min{score1}): 0.8332 [and 1/min{score2}: 0.7142] [340, 5548]: Comparing 1bb9 and 1r4k_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 12 (4 H + 8 S) secondary structure elements in 1r4k_A, of which 11 satisfy the size requirements. 2.14288 [ 2.92516] ((2 . 4) (4 . 7) (7 . 8) (9 . 10)) 6.261 {1/5:6} B:0 4.01984 [ 4.20698] ((2 . 5) (4 . 7) (7 . 8) (9 . 10)) 7.683 {2/5:6} B:0 1.38032 [ 2.23567] ((1 . 10) (2 . 4) (4 . 7) (7 . 8) (9 . 12)) 6.783 {1/9:10} B:1 SIMILARITY (1/min{score1}): 0.7245 [and 1/min{score2}: 0.4473] [340, 5668]: Comparing 1bb9 and 1rl2_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 14 (2 H + 12 S) secondary structure elements in 1rl2_A, of which 7 satisfy the size requirements. 1.50091 [ 1.75057] ((1 . 8) (2 . 11) (4 . 12) (7 . 14)) 5.323 {0/6:6} B:0 2.14260 [ 2.24476] ((1 . 6) (2 . 10) (7 . 13) (9 . 14)) 5.313 {1/5:6} B:0 4.00847 [ 4.01532] ((1 . 11) (2 . 12) (4 . 13) (7 . 14) (9 . 8)) 9.046 {4/10:10} B:1 SIMILARITY (1/min{score1}): 0.6663 [and 1/min{score2}: 0.5712] [340, 5805]: Comparing 1bb9 and 1sf9_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1sf9_A, of which 8 satisfy the size requirements. NO SIMILARITY! [340, 5957]: Comparing 1bb9 and 1ub4_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 10 (3 H + 7 S) secondary structure elements in 1ub4_A, of which 10 satisfy the size requirements. 1.20024 [ 2.00005] ((1 . 1) (2 . 2) (4 . 4) (7 . 7) (9 . 9)) 3.218 {0/9:10} B:0 1.20130 [ 2.00028] ((1 . 1) (2 . 2) (4 . 4) (7 . 6) (9 . 7)) 4.930 {0/10:10} B:0 1.50030 [ 2.50006] ((2 . 1) (4 . 2) (5 . 3) (7 . 4)) 4.036 {0/4:6} B:0 1.50187 [ 2.50040] ((1 . 2) (2 . 4) (4 . 6) (5 . 8)) 6.379 {0/5:6} B:0 2.14305 [ 2.72442] ((1 . 1) (4 . 5) (7 . 7) (9 . 9)) 6.667 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.8332 [and 1/min{score2}: 0.5000] [340, 6009]: Comparing 1bb9 and 1ug1_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 8 (3 H + 5 S) secondary structure elements in 1ug1_A, of which 6 satisfy the size requirements. 1.50078 [ 1.50078] ((1 . 3) (2 . 4) (4 . 5) (7 . 8)) 5.128 {0/6:6} B:0 5.01017 [ 5.01017] ((1 . 3) (2 . 4) (4 . 6) (7 . 8)) 7.173 {3/6:6} B:0 SIMILARITY (1/min{score1}): 0.6663 [and 1/min{score2}: 0.6663] [340, 6325]: Comparing 1bb9 and 1vyn_A, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 14 (5 H + 9 S) secondary structure elements in 1vyn_A, of which 12 satisfy the size requirements. 1.20002 [ 2.40000] ((1 . 5) (2 . 6) (4 . 11) (7 . 12) (9 . 14)) 1.754 {0/10:10} B:0 1.32583 [ 2.41817] ((1 . 5) (2 . 6) (4 . 8) (7 . 12) (9 . 14)) 5.721 {1/10:10} B:0 1.50252 [ 3.00032] ((1 . 5) (2 . 6) (4 . 8) (7 . 9)) 6.875 {0/6:6} B:0 1.50930 [ 3.00117] ((2 . 9) (4 . 11) (7 . 12) (9 . 14)) 9.546 {0/5:6} B:0 2.14265 [ 3.13841] ((2 . 8) (4 . 9) (5 . 10) (9 . 12)) 5.550 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.8333 [and 1/min{score2}: 0.4167] [340, 6391]: Comparing 1bb9 and 2ahj_B, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 14 (9 H + 5 S) secondary structure elements in 2ahj_B, of which 13 satisfy the size requirements. 2.32782 [ 2.66446] ((1 . 6) (2 . 8) (4 . 10) (5 . 11) (7 . 12) (9 . 14)) 3.625 {3/13:15} B:0 2.14341 [ 3.36103] ((1 . 8) (2 . 10) (4 . 12) (5 . 11)) 7.341 {1/5:6} B:1 5.01036 [ 5.20982] ((2 . 6) (4 . 8) (5 . 7) (9 . 10)) 9.710 {3/6:6} B:1 6.00590 [ 6.12520] ((1 . 8) (5 . 11) (7 . 14) (9 . 12)) 7.314 {3/5:6} B:1 4.61797 [ 4.67047] ((1 . 10) (2 . 12) (4 . 14) (5 . 11) (7 . 6) (9 . 8)) 5.793 {6/13:15} B:2 SIMILARITY (1/min{score1}): 0.4665 [and 1/min{score2}: 0.3753] [340, 6604]: Comparing 1bb9 and 3vub, based on their crossing files. There are 9 (4 H + 5 S) secondary structure elements in 1bb9, of which 6 satisfy the size requirements. There are 10 (3 H + 7 S) secondary structure elements in 3vub, of which 8 satisfy the size requirements. 1.50024 [ 2.00010] ((2 . 1) (4 . 2) (7 . 3) (9 . 4)) 3.806 {0/6:6} B:0 1.50064 [ 2.00027] ((1 . 1) (4 . 4) (7 . 5) (9 . 7)) 4.880 {0/5:6} B:0 1.50290 [ 2.00123] ((1 . 1) (2 . 2) (4 . 3) (9 . 5)) 7.123 {0/6:6} B:0 1.50317 [ 2.00134] ((1 . 1) (4 . 4) (7 . 7) (9 . 9)) 7.280 {0/5:6} B:0 6.67098 [ 6.68017] ((1 . 3) (2 . 4) (4 . 5) (7 . 9)) 7.830 {4/6:6} B:0 SIMILARITY (1/min{score1}): 0.8331 [and 1/min{score2}: 0.6250] -------------------------------------------------------------------------------------------------------------------------