------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3326 1kjw_A) ( 251 1azp_A) 0.1993 0.1996 6.5171 ( 2 4 6) 0 0.1993 0.1996 7 6 ( 3326 1kjw_A) ( 340 1bb9 ) 0.6741 0.7551 3.4181 ( 1 10 10) 0 0.6741 0.7551 7 6 ( 3326 1kjw_A) ( 414 1bkb ) 0.2477 0.2477 8.2361 ( 2 5 6) 0 0.5712 0.5712 7 7 ( 3326 1kjw_A) ( 501 1c0m_A) nil ( 3326 1kjw_A) ( 1648 1fx7_A) 0.6570 0.6570 3.5361 ( 1 9 10) 0 0.6570 0.6570 7 7 ( 3326 1kjw_A) ( 1715 1g3s_A) 0.1992 0.1992 10.9102 ( 3 6 6) 1 0.1992 0.1992 7 7 ( 3326 1kjw_A) ( 2073 1h3z_A) 0.5714 0.5000 3.0070 ( 0 6 6) 0 0.5714 0.5000 7 8 ( 3326 1kjw_A) ( 2334 1hyo_A) 0.4917 0.3523 4.9730 ( 1 6 6) 0 0.7133 0.4544 7 11 ( 3326 1kjw_A) ( 2363 1i1j_A) 0.5712 0.4999 5.6155 ( 0 6 6) 0 0.5712 0.4999 7 8 ( 3326 1kjw_A) ( 2581 1ire_B) 0.6563 0.3549 6.2969 ( 1 9 10) 0 0.6563 0.3962 7 14 ( 3326 1kjw_A) ( 2900 1jj2_A) 0.5713 0.4999 5.0880 ( 0 6 6) 0 0.5713 0.4999 7 8 ( 3326 1kjw_A) ( 2913 1jj2_P) 0.6569 0.7258 4.3335 ( 1 9 10) 0 0.6569 0.7258 7 6 ( 3326 1kjw_A) ( 2916 1jj2_S) 0.4913 0.3522 8.3950 ( 1 6 6) 0 0.7136 0.4545 7 11 ( 3326 1kjw_A) ( 3300 1khc_A) 0.5714 0.4444 2.5596 ( 0 6 6) 0 0.5714 0.4444 7 9 ( 3326 1kjw_A) ( 3303 1khi_A) 0.2478 0.2488 7.1016 ( 2 5 6) 0 0.2478 0.2488 7 6 ( 3326 1kjw_A) ( 3326 1kjw_A) 1.0000 1.0000 0.0000 ( 0 19 21) 0 1.0000 1.0000 7 7 ( 3326 1kjw_A) ( 3693 1lpl_A) 0.5696 0.6626 9.4986 ( 0 5 6) 0 0.5696 0.6626 7 6 ( 3326 1kjw_A) ( 3783 1m1f_A) 0.5714 0.4444 3.6020 ( 0 6 6) 0 0.6541 0.5360 7 9 ( 3326 1kjw_A) ( 3838 1m4z_A) 0.5709 0.2353 6.9863 ( 0 3 6) 0 0.5709 0.2353 7 17 ( 3326 1kjw_A) ( 3892 1m9s_A) 0.6315 0.6859 3.9456 ( 1 8 10) 0 0.6315 0.6859 7 6 ( 3326 1kjw_A) ( 4112 1n27_A) 0.6569 0.6569 3.7495 ( 1 9 10) 0 0.6569 0.6569 7 7 ( 3326 1kjw_A) ( 4209 1ne8_A) 0.5708 0.3999 7.1105 ( 0 4 6) 0 0.7128 0.4997 7 10 ( 3326 1kjw_A) ( 4236 1ng2_A) 0.7139 0.7139 4.7036 ( 0 9 10) 0 0.7139 0.7139 7 7 ( 3326 1kjw_A) ( 4665 1oi1_A) 0.5714 0.6667 2.2355 ( 0 6 6) 0 0.5714 0.6667 7 6 ( 3326 1kjw_A) ( 4842 1oz2_A) 0.5714 0.6666 2.4969 ( 0 6 6) 0 0.5714 0.6666 7 6 ( 3326 1kjw_A) ( 4843 1oz2_A) 0.5714 0.6667 2.3892 ( 0 6 6) 0 0.5714 0.6667 7 6 ( 3326 1kjw_A) ( 5014 1pht ) 0.6741 0.6741 2.9475 ( 1 10 10) 0 0.6741 0.6741 7 7 ( 3326 1kjw_A) ( 5548 1r4k_A) 0.4448 0.3417 10.1288 ( 1 5 6) 0 0.5714 0.3636 7 11 ( 3326 1kjw_A) ( 5668 1rl2_A) 0.5712 0.5712 5.3153 ( 0 6 6) 0 0.5712 0.5712 7 7 ( 3326 1kjw_A) ( 5805 1sf9_A) 0.5712 0.4999 5.3457 ( 0 6 6) 0 0.7137 0.6247 7 8 ( 3326 1kjw_A) ( 5957 1ub4_A) 0.4454 0.3671 6.2486 ( 1 5 6) 0 0.5714 0.4000 7 10 ( 3326 1kjw_A) ( 6009 1ug1_A) 0.5713 0.6663 5.2421 ( 0 6 6) 0 0.5713 0.6663 7 6 ( 3326 1kjw_A) ( 6325 1vyn_A) 0.5710 0.3333 6.6602 ( 0 6 6) 0 0.5710 0.3630 7 12 ( 3326 1kjw_A) ( 6391 2ahj_B) 0.5713 0.3077 4.6786 ( 0 5 6) 0 0.5713 0.4281 7 13 ( 3326 1kjw_A) ( 6604 3vub ) 0.5713 0.4999 4.6769 ( 0 5 6) 0 0.7138 0.6247 7 8 -------------------------------------------------------------------------------------------------------------------------