------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3303 1khi_A) ( 251 1azp_A) 0.6662 0.6662 5.6273 ( 0 4 6) 0 0.6662 0.6662 6 6 ( 3303 1khi_A) ( 340 1bb9 ) nil ( 3303 1khi_A) ( 414 1bkb ) 0.9059 0.8088 3.5584 ( 1 12 15) 0 0.9059 0.8088 6 7 ( 3303 1khi_A) ( 501 1c0m_A) 0.6658 0.6658 6.4338 ( 0 4 6) 0 0.6658 0.6658 6 6 ( 3303 1khi_A) ( 1648 1fx7_A) 0.6660 0.5711 5.9695 ( 0 4 6) 0 0.6660 0.5711 6 7 ( 3303 1khi_A) ( 1715 1g3s_A) 0.1996 0.1993 4.9905 ( 2 4 6) 0 0.1996 0.1993 6 7 ( 3303 1khi_A) ( 2073 1h3z_A) nil ( 3303 1khi_A) ( 2334 1hyo_A) nil ( 3303 1khi_A) ( 2363 1i1j_A) nil ( 3303 1khi_A) ( 2581 1ire_B) nil ( 3303 1khi_A) ( 2900 1jj2_A) 0.5819 0.5506 3.7146 ( 2 12 15) 0 0.5819 0.5506 6 8 ( 3303 1khi_A) ( 2913 1jj2_P) 0.1996 0.1996 5.2894 ( 2 4 6) 0 0.1996 0.1996 6 6 ( 3303 1khi_A) ( 2916 1jj2_S) 0.4665 0.3418 7.7151 ( 1 5 6) 0 0.9978 0.5453 6 11 ( 3303 1khi_A) ( 3300 1khc_A) 0.6666 0.4444 3.6436 ( 0 5 6) 0 0.6666 0.4444 6 9 ( 3303 1khi_A) ( 3303 1khi_A) 1.0000 1.0000 0.0000 ( 0 12 15) 0 1.0000 1.0000 6 6 ( 3303 1khi_A) ( 3326 1kjw_A) 0.2488 0.2478 7.1016 ( 2 5 6) 0 0.2488 0.2478 6 7 ( 3303 1khi_A) ( 3693 1lpl_A) nil ( 3303 1khi_A) ( 3783 1m1f_A) 0.3880 0.3526 5.3784 ( 1 4 6) 0 0.6666 0.4444 6 9 ( 3303 1khi_A) ( 3838 1m4z_A) 0.3879 0.2287 7.8647 ( 1 4 6) 0 0.3879 0.2287 6 17 ( 3303 1khi_A) ( 3892 1m9s_A) 0.6655 0.6655 6.9203 ( 0 3 6) 0 0.6655 0.6655 6 6 ( 3303 1khi_A) ( 4112 1n27_A) 0.6666 0.5714 3.4017 ( 0 5 6) 0 0.6666 0.5944 6 7 ( 3303 1khi_A) ( 4209 1ne8_A) 0.3880 0.3363 5.4302 ( 1 4 6) 0 0.6828 0.4820 6 10 ( 3303 1khi_A) ( 4236 1ng2_A) 0.1996 0.1993 5.4799 ( 2 4 6) 0 0.1996 0.1993 6 7 ( 3303 1khi_A) ( 4665 1oi1_A) 0.6666 0.6666 2.4037 ( 0 5 6) 0 0.6666 0.6666 6 6 ( 3303 1khi_A) ( 4842 1oz2_A) 0.6666 0.6666 2.9206 ( 0 5 6) 0 0.6666 0.6666 6 6 ( 3303 1khi_A) ( 4843 1oz2_A) 0.6667 0.6667 2.3643 ( 0 5 6) 0 0.6667 0.6667 6 6 ( 3303 1khi_A) ( 5014 1pht ) nil ( 3303 1khi_A) ( 5548 1r4k_A) 0.4664 0.3418 8.4402 ( 1 5 6) 0 0.6665 0.3991 6 11 ( 3303 1khi_A) ( 5668 1rl2_A) 0.6859 0.6316 3.5365 ( 1 8 10) 0 0.6859 0.6316 6 7 ( 3303 1khi_A) ( 5805 1sf9_A) 0.6859 0.5774 3.4913 ( 1 8 10) 0 0.6859 0.5774 6 8 ( 3303 1khi_A) ( 5957 1ub4_A) 0.3880 0.3363 5.3396 ( 1 4 6) 0 0.3880 0.3363 6 10 ( 3303 1khi_A) ( 6009 1ug1_A) 0.6666 0.6666 2.7797 ( 0 5 6) 0 0.6666 0.6666 6 6 ( 3303 1khi_A) ( 6325 1vyn_A) 0.4667 0.3186 6.0730 ( 1 5 6) 0 0.6664 0.3333 6 12 ( 3303 1khi_A) ( 6391 2ahj_B) nil ( 3303 1khi_A) ( 6604 3vub ) 0.6648 0.4996 7.8246 ( 0 5 6) 0 0.6855 0.5772 6 8 -------------------------------------------------------------------------------------------------------------------------