------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3300 1khc_A) ( 251 1azp_A) 0.4444 0.6666 3.2324 ( 0 4 6) 0 0.4444 0.6666 9 6 ( 3300 1khc_A) ( 340 1bb9 ) 0.4444 0.6667 2.3045 ( 0 6 6) 0 0.4444 0.6667 9 6 ( 3300 1khc_A) ( 414 1bkb ) 0.4444 0.5714 2.4197 ( 0 5 6) 0 0.4444 0.5714 9 7 ( 3300 1khc_A) ( 501 1c0m_A) 0.4444 0.6666 3.3920 ( 0 5 6) 0 0.4444 0.6666 9 6 ( 3300 1khc_A) ( 1648 1fx7_A) 0.4444 0.5714 3.8739 ( 0 5 6) 0 0.5551 0.7128 9 7 ( 3300 1khc_A) ( 1715 1g3s_A) 0.4444 0.5713 4.6841 ( 0 5 6) 0 0.4444 0.5713 9 7 ( 3300 1khc_A) ( 2073 1h3z_A) 0.6664 0.7494 4.9696 ( 0 12 15) 0 0.6664 0.7494 9 8 ( 3300 1khc_A) ( 2334 1hyo_A) 0.4441 0.3635 8.5507 ( 0 5 6) 0 0.4441 0.3635 9 11 ( 3300 1khc_A) ( 2363 1i1j_A) 0.4444 0.5000 3.3661 ( 0 6 6) 0 0.5364 0.5921 9 8 ( 3300 1khc_A) ( 2581 1ire_B) nil ( 3300 1khc_A) ( 2900 1jj2_A) 0.5555 0.6249 3.6723 ( 0 9 10) 0 0.5555 0.6249 9 8 ( 3300 1khc_A) ( 2913 1jj2_P) 0.4442 0.6648 7.7909 ( 0 5 6) 0 0.4442 0.6648 9 6 ( 3300 1khc_A) ( 2916 1jj2_S) 0.4442 0.3635 7.8043 ( 0 6 6) 0 0.4442 0.3635 9 11 ( 3300 1khc_A) ( 3300 1khc_A) 1.0000 1.0000 0.0000 ( 0 31 36) 0 1.0000 1.0000 9 9 ( 3300 1khc_A) ( 3303 1khi_A) 0.4444 0.6666 3.6436 ( 0 5 6) 0 0.4444 0.6666 9 6 ( 3300 1khc_A) ( 3326 1kjw_A) 0.4444 0.5714 2.5596 ( 0 6 6) 0 0.4444 0.5714 9 7 ( 3300 1khc_A) ( 3693 1lpl_A) 0.4444 0.6666 3.3948 ( 0 5 6) 0 0.4444 0.6666 9 6 ( 3300 1khc_A) ( 3783 1m1f_A) 0.3937 0.3937 4.4961 ( 1 5 6) 0 0.5364 0.5364 9 9 ( 3300 1khc_A) ( 3838 1m4z_A) 0.5369 0.2933 5.5988 ( 1 9 10) 0 0.5555 0.2941 9 17 ( 3300 1khc_A) ( 3892 1m9s_A) nil ( 3300 1khc_A) ( 4112 1n27_A) 0.5555 0.7142 2.7292 ( 0 9 10) 0 0.5555 0.7142 9 7 ( 3300 1khc_A) ( 4209 1ne8_A) 0.3936 0.3671 5.9604 ( 1 5 6) 0 0.3936 0.3671 9 10 ( 3300 1khc_A) ( 4236 1ng2_A) 0.5362 0.6547 8.4643 ( 1 9 10) 0 0.5362 0.6547 9 7 ( 3300 1khc_A) ( 4665 1oi1_A) 0.4444 0.6666 2.6947 ( 0 6 6) 0 0.5553 0.8317 9 6 ( 3300 1khc_A) ( 4842 1oz2_A) 0.5554 0.8324 4.9897 ( 0 8 10) 0 0.5554 0.8324 9 6 ( 3300 1khc_A) ( 4843 1oz2_A) 0.5554 0.8324 4.9201 ( 0 8 10) 0 0.5554 0.8324 9 6 ( 3300 1khc_A) ( 5014 1pht ) nil ( 3300 1khc_A) ( 5548 1r4k_A) 0.4444 0.3636 6.1032 ( 0 6 6) 0 0.4444 0.3636 9 11 ( 3300 1khc_A) ( 5668 1rl2_A) 0.2862 0.2945 7.6620 ( 2 6 6) 0 0.4161 0.4917 9 7 ( 3300 1khc_A) ( 5805 1sf9_A) 0.1980 0.1987 7.4389 ( 3 6 6) 0 0.2441 0.2462 9 8 ( 3300 1khc_A) ( 5957 1ub4_A) 0.4441 0.3998 8.5674 ( 0 4 6) 0 0.4441 0.3998 9 10 ( 3300 1khc_A) ( 6009 1ug1_A) 0.4444 0.6667 2.3104 ( 0 6 6) 0 0.5555 0.8331 9 6 ( 3300 1khc_A) ( 6325 1vyn_A) 0.4443 0.3333 7.0164 ( 0 6 6) 0 0.4444 0.3430 9 12 ( 3300 1khc_A) ( 6391 2ahj_B) 0.3937 0.2975 5.4003 ( 1 5 6) 0 0.3937 0.2975 9 13 ( 3300 1khc_A) ( 6604 3vub ) 0.2441 0.2462 8.0337 ( 2 5 6) 0 0.4444 0.5000 9 8 -------------------------------------------------------------------------------------------------------------------------