------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2916 1jj2_S) ( 251 1azp_A) 0.3636 0.6656 6.7623 ( 0 4 6) 0 0.4544 0.8309 11 6 ( 2916 1jj2_S) ( 340 1bb9 ) 0.4545 0.8326 4.6263 ( 0 10 10) 0 0.4545 0.8326 11 6 ( 2916 1jj2_S) ( 414 1bkb ) 0.3636 0.5712 5.3202 ( 0 5 6) 0 0.4788 0.5712 11 7 ( 2916 1jj2_S) ( 501 1c0m_A) 0.3636 0.6658 6.5174 ( 0 6 6) 0 0.3636 0.6658 11 6 ( 2916 1jj2_S) ( 1648 1fx7_A) 0.4545 0.7141 3.8342 ( 0 9 10) 0 0.4545 0.7141 11 7 ( 2916 1jj2_S) ( 1715 1g3s_A) 0.4545 0.7142 3.4526 ( 0 9 10) 0 0.4545 0.7142 11 7 ( 2916 1jj2_S) ( 2073 1h3z_A) 0.3636 0.4998 6.6883 ( 0 6 6) 0 0.3636 0.4998 11 8 ( 2916 1jj2_S) ( 2334 1hyo_A) 0.1957 0.1957 10.4925 ( 3 6 6) 0 0.2727 0.2727 11 11 ( 2916 1jj2_S) ( 2363 1i1j_A) 0.4545 0.6249 4.0465 ( 0 9 10) 0 0.4545 0.6249 11 8 ( 2916 1jj2_S) ( 2581 1ire_B) 0.3636 0.2857 7.3968 ( 0 5 6) 0 0.4545 0.3571 11 14 ( 2916 1jj2_S) ( 2900 1jj2_A) 0.4544 0.6245 6.0333 ( 0 10 10) 0 0.4544 0.6245 11 8 ( 2916 1jj2_S) ( 2913 1jj2_P) 0.3636 0.6661 5.7371 ( 0 5 6) 0 0.3636 0.6661 11 6 ( 2916 1jj2_S) ( 2916 1jj2_S) 1.0000 1.0000 0.0000 ( 0 53 55) 0 1.0000 1.0000 11 11 ( 2916 1jj2_S) ( 3300 1khc_A) 0.3635 0.4442 7.8043 ( 0 6 6) 0 0.3635 0.4442 11 9 ( 2916 1jj2_S) ( 3303 1khi_A) 0.3636 0.6656 6.8692 ( 0 3 6) 0 0.5453 0.9978 11 6 ( 2916 1jj2_S) ( 3326 1kjw_A) 0.3522 0.4913 8.3950 ( 1 6 6) 0 0.4545 0.7136 11 7 ( 2916 1jj2_S) ( 3693 1lpl_A) 0.3523 0.5287 5.9244 ( 1 6 6) 0 0.4363 0.6327 11 6 ( 2916 1jj2_S) ( 3783 1m1f_A) 0.3636 0.4444 6.0442 ( 0 5 6) 0 0.4544 0.5553 11 9 ( 2916 1jj2_S) ( 3838 1m4z_A) 0.3635 0.2353 8.5106 ( 0 4 6) 0 0.4190 0.3288 11 17 ( 2916 1jj2_S) ( 3892 1m9s_A) 0.4545 0.8327 4.5031 ( 0 8 10) 0 0.4545 0.8327 11 6 ( 2916 1jj2_S) ( 4112 1n27_A) 0.4545 0.7140 4.4659 ( 0 9 10) 0 0.4545 0.7140 11 7 ( 2916 1jj2_S) ( 4209 1ne8_A) 0.4473 0.4885 6.8512 ( 1 9 10) 0 0.4473 0.4885 11 10 ( 2916 1jj2_S) ( 4236 1ng2_A) 0.4545 0.7141 4.1501 ( 0 10 10) 0 0.4545 0.7141 11 7 ( 2916 1jj2_S) ( 4665 1oi1_A) 0.3636 0.6664 4.6937 ( 0 6 6) 0 0.3636 0.6664 11 6 ( 2916 1jj2_S) ( 4842 1oz2_A) 0.3636 0.6663 5.1866 ( 0 6 6) 0 0.3636 0.6663 11 6 ( 2916 1jj2_S) ( 4843 1oz2_A) 0.3636 0.6665 4.4173 ( 0 6 6) 0 0.3636 0.6665 11 6 ( 2916 1jj2_S) ( 5014 1pht ) 0.3636 0.5710 6.7285 ( 0 5 6) 0 0.3636 0.5710 11 7 ( 2916 1jj2_S) ( 5548 1r4k_A) 0.4545 0.4545 5.4914 ( 0 6 10) 0 0.4545 0.4545 11 11 ( 2916 1jj2_S) ( 5668 1rl2_A) 0.4192 0.4569 4.5377 ( 3 14 15) 0 0.4192 0.5713 11 7 ( 2916 1jj2_S) ( 5805 1sf9_A) 0.4545 0.6249 3.9824 ( 0 10 10) 0 0.4545 0.6249 11 8 ( 2916 1jj2_S) ( 5957 1ub4_A) 0.3636 0.3999 6.1859 ( 0 6 6) 0 0.4474 0.4887 11 10 ( 2916 1jj2_S) ( 6009 1ug1_A) 0.4545 0.8328 4.3947 ( 0 10 10) 0 0.4545 0.8328 11 6 ( 2916 1jj2_S) ( 6325 1vyn_A) 0.5452 0.4998 5.9680 ( 0 14 15) 0 0.5452 0.4998 11 12 ( 2916 1jj2_S) ( 6391 2ahj_B) 0.3521 0.3025 9.4129 ( 1 6 6) 0 0.3521 0.3025 11 13 ( 2916 1jj2_S) ( 6604 3vub ) 0.3636 0.4999 5.7896 ( 0 6 6) 0 0.4544 0.6244 11 8 -------------------------------------------------------------------------------------------------------------------------