------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2900 1jj2_A) ( 251 1azp_A) 0.4999 0.6661 5.6938 ( 0 4 6) 0 0.6245 0.8314 8 6 ( 2900 1jj2_A) ( 340 1bb9 ) 0.6250 0.8333 2.4427 ( 0 10 10) 0 0.6250 0.8333 8 6 ( 2900 1jj2_A) ( 414 1bkb ) 0.7304 0.8206 3.4069 ( 1 13 15) 0 0.7304 0.8206 8 7 ( 2900 1jj2_A) ( 501 1c0m_A) 0.6250 0.8332 2.8028 ( 0 9 10) 0 0.6250 0.8332 8 6 ( 2900 1jj2_A) ( 1648 1fx7_A) 0.5931 0.6569 4.2011 ( 1 9 10) 0 0.5931 0.6569 8 7 ( 2900 1jj2_A) ( 1715 1g3s_A) 0.5931 0.6570 3.6410 ( 1 9 10) 0 0.5931 0.6570 8 7 ( 2900 1jj2_A) ( 2073 1h3z_A) 0.7346 0.7346 5.4289 ( 1 14 15) 0 0.7346 0.7346 8 8 ( 2900 1jj2_A) ( 2334 1hyo_A) 0.4995 0.3635 7.8488 ( 0 5 6) 0 0.4995 0.3635 8 11 ( 2900 1jj2_A) ( 2363 1i1j_A) 0.6250 0.6250 2.5166 ( 0 9 10) 0 0.6250 0.6250 8 8 ( 2900 1jj2_A) ( 2581 1ire_B) 0.5505 0.4045 5.4458 ( 2 12 15) 1 0.5505 0.4045 8 14 ( 2900 1jj2_A) ( 2900 1jj2_A) 1.0000 1.0000 0.0000 ( 0 25 28) 0 1.0000 1.0000 8 8 ( 2900 1jj2_A) ( 2913 1jj2_P) 0.6250 0.8332 3.0295 ( 0 9 10) 0 0.6250 0.8332 8 6 ( 2900 1jj2_A) ( 2916 1jj2_S) 0.6245 0.4544 6.0333 ( 0 10 10) 0 0.6245 0.4544 8 11 ( 2900 1jj2_A) ( 3300 1khc_A) 0.6249 0.5555 3.6723 ( 0 9 10) 0 0.6249 0.5555 8 9 ( 2900 1jj2_A) ( 3303 1khi_A) 0.5506 0.5819 3.7146 ( 2 12 15) 0 0.5506 0.5819 8 6 ( 2900 1jj2_A) ( 3326 1kjw_A) 0.4999 0.5713 5.0880 ( 0 6 6) 0 0.4999 0.5713 8 7 ( 2900 1jj2_A) ( 3693 1lpl_A) 0.4999 0.6661 5.7208 ( 0 5 6) 0 0.5000 0.6665 8 6 ( 2900 1jj2_A) ( 3783 1m1f_A) 0.3665 0.3521 12.2520 ( 1 4 6) 0 0.7352 0.6583 8 9 ( 2900 1jj2_A) ( 3838 1m4z_A) 0.4996 0.2353 7.3827 ( 0 3 6) 0 0.6247 0.3053 8 17 ( 2900 1jj2_A) ( 3892 1m9s_A) 0.5773 0.6857 4.9299 ( 1 8 10) 0 0.5773 0.6857 8 6 ( 2900 1jj2_A) ( 4112 1n27_A) 0.6247 0.7136 5.5174 ( 0 7 10) 0 0.6250 0.7142 8 7 ( 2900 1jj2_A) ( 4209 1ne8_A) 0.6248 0.4999 4.9113 ( 0 10 10) 0 0.6248 0.4999 8 10 ( 2900 1jj2_A) ( 4236 1ng2_A) 0.6250 0.7143 2.1667 ( 0 10 10) 0 0.6250 0.7143 8 7 ( 2900 1jj2_A) ( 4665 1oi1_A) 0.5929 0.7254 5.3967 ( 1 9 10) 0 0.5929 0.7254 8 6 ( 2900 1jj2_A) ( 4842 1oz2_A) 0.5000 0.6666 3.3956 ( 0 6 6) 0 0.5000 0.6666 8 6 ( 2900 1jj2_A) ( 4843 1oz2_A) 0.5929 0.7252 5.7605 ( 1 9 10) 0 0.5929 0.7252 8 6 ( 2900 1jj2_A) ( 5014 1pht ) 0.1987 0.1993 6.7523 ( 3 6 6) 0 0.4999 0.5713 8 7 ( 2900 1jj2_A) ( 5548 1r4k_A) 0.6249 0.4545 4.0459 ( 0 9 10) 0 0.6250 0.4545 8 11 ( 2900 1jj2_A) ( 5668 1rl2_A) 0.7500 0.8571 1.3066 ( 0 14 15) 0 0.7500 0.8571 8 7 ( 2900 1jj2_A) ( 5805 1sf9_A) 0.6250 0.6250 2.0494 ( 0 10 10) 0 0.6250 0.6250 8 8 ( 2900 1jj2_A) ( 5957 1ub4_A) 0.4193 0.3665 12.3953 ( 1 5 6) 0 0.4193 0.3665 8 10 ( 2900 1jj2_A) ( 6009 1ug1_A) 0.6250 0.8333 2.1026 ( 0 10 10) 0 0.6250 0.8333 8 6 ( 2900 1jj2_A) ( 6325 1vyn_A) 0.6250 0.4167 2.9516 ( 0 10 10) 0 0.6250 0.4167 8 12 ( 2900 1jj2_A) ( 6391 2ahj_B) nil ( 2900 1jj2_A) ( 6604 3vub ) 0.6249 0.6249 4.1310 ( 0 10 10) 0 0.6249 0.6249 8 8 -------------------------------------------------------------------------------------------------------------------------