------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2581 1ire_B) ( 251 1azp_A) 0.2785 0.4657 10.6890 ( 1 5 6) 0 0.2785 0.4657 14 6 ( 2581 1ire_B) ( 340 1bb9 ) 0.3571 0.8321 5.3503 ( 0 8 10) 0 0.3571 0.8321 14 6 ( 2581 1ire_B) ( 414 1bkb ) nil ( 2581 1ire_B) ( 501 1c0m_A) nil ( 2581 1ire_B) ( 1648 1fx7_A) 0.4273 0.8200 4.8987 ( 1 13 15) 0 0.4273 0.8200 14 7 ( 2581 1ire_B) ( 1715 1g3s_A) 0.1895 0.1993 8.4805 ( 2 4 6) 0 0.1895 0.1993 14 7 ( 2581 1ire_B) ( 2073 1h3z_A) 0.2785 0.4203 7.4108 ( 1 5 6) 0 0.2785 0.4203 14 8 ( 2581 1ire_B) ( 2334 1hyo_A) 0.2784 0.3414 12.7768 ( 1 5 6) 0 0.2784 0.3414 14 11 ( 2581 1ire_B) ( 2363 1i1j_A) 0.2857 0.4998 6.7293 ( 0 5 6) 0 0.3571 0.6247 14 8 ( 2581 1ire_B) ( 2581 1ire_B) 1.0000 1.0000 0.0000 ( 0 83 91) 0 1.0000 1.0000 14 14 ( 2581 1ire_B) ( 2900 1jj2_A) 0.2857 0.4998 6.4119 ( 0 5 6) 0 0.4045 0.5505 14 8 ( 2581 1ire_B) ( 2913 1jj2_P) 0.1895 0.1996 8.3643 ( 2 4 6) 0 0.1895 0.1996 14 6 ( 2581 1ire_B) ( 2916 1jj2_S) 0.2857 0.3636 7.3968 ( 0 5 6) 0 0.3571 0.4545 14 11 ( 2581 1ire_B) ( 3300 1khc_A) nil ( 2581 1ire_B) ( 3303 1khi_A) nil ( 2581 1ire_B) ( 3326 1kjw_A) 0.3549 0.6563 6.2969 ( 1 9 10) 0 0.3962 0.6563 14 7 ( 2581 1ire_B) ( 3693 1lpl_A) 0.3571 0.8331 3.6209 ( 0 7 10) 0 0.4260 0.8722 14 6 ( 2581 1ire_B) ( 3783 1m1f_A) 0.3536 0.5269 6.8589 ( 1 8 10) 0 0.3536 0.5269 14 9 ( 2581 1ire_B) ( 3838 1m4z_A) 0.2856 0.2352 12.1423 ( 0 6 6) 0 0.2857 0.2497 14 17 ( 2581 1ire_B) ( 3892 1m9s_A) 0.2786 0.4666 6.6662 ( 1 5 6) 0 0.2786 0.4666 14 6 ( 2581 1ire_B) ( 4112 1n27_A) 0.2228 0.2477 8.3765 ( 2 5 6) 0 0.2228 0.2477 14 7 ( 2581 1ire_B) ( 4209 1ne8_A) 0.3571 0.4999 5.3542 ( 0 7 10) 0 0.3571 0.4999 14 10 ( 2581 1ire_B) ( 4236 1ng2_A) 0.2857 0.5701 8.6527 ( 0 5 6) 1 0.2857 0.5701 14 7 ( 2581 1ire_B) ( 4665 1oi1_A) nil ( 2581 1ire_B) ( 4842 1oz2_A) 0.2697 0.3880 5.7436 ( 1 4 6) 0 0.3513 0.6319 14 6 ( 2581 1ire_B) ( 4843 1oz2_A) 0.2857 0.6664 4.8373 ( 0 4 6) 0 0.2857 0.6664 14 6 ( 2581 1ire_B) ( 5014 1pht ) 0.1895 0.1993 6.3108 ( 2 4 6) 0 0.3513 0.5941 14 7 ( 2581 1ire_B) ( 5548 1r4k_A) 0.3571 0.4545 4.6423 ( 0 7 10) 0 0.3571 0.4545 14 11 ( 2581 1ire_B) ( 5668 1rl2_A) nil ( 2581 1ire_B) ( 5805 1sf9_A) 0.2458 0.2907 13.9386 ( 2 6 6) 0 0.2458 0.2907 14 8 ( 2581 1ire_B) ( 5957 1ub4_A) 0.3571 0.4998 6.2370 ( 0 7 10) 0 0.4285 0.5995 14 10 ( 2581 1ire_B) ( 6009 1ug1_A) 0.2857 0.6640 8.5436 ( 0 5 6) 1 0.2857 0.6640 14 6 ( 2581 1ire_B) ( 6325 1vyn_A) 0.3571 0.4166 4.4929 ( 0 8 10) 0 0.3571 0.4166 14 12 ( 2581 1ire_B) ( 6391 2ahj_B) 0.9284 0.9997 2.6387 ( 1 71 78) 0 0.9284 0.9997 14 13 ( 2581 1ire_B) ( 6604 3vub ) 0.3571 0.6246 5.6512 ( 0 8 10) 0 0.4103 0.6246 14 8 -------------------------------------------------------------------------------------------------------------------------