------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2334 1hyo_A) ( 251 1azp_A) 0.3636 0.6655 6.9036 ( 0 4 6) 0 0.3636 0.6655 11 6 ( 2334 1hyo_A) ( 340 1bb9 ) 0.5424 0.9437 2.0833 ( 1 14 15) 0 0.5424 0.9437 11 6 ( 2334 1hyo_A) ( 414 1bkb ) nil ( 2334 1hyo_A) ( 501 1c0m_A) nil ( 2334 1hyo_A) ( 1648 1fx7_A) 0.3636 0.5714 3.8395 ( 0 5 6) 0 0.4474 0.6569 11 7 ( 2334 1hyo_A) ( 1715 1g3s_A) 0.3636 0.5714 3.8986 ( 0 5 6) 0 0.5042 0.6382 11 7 ( 2334 1hyo_A) ( 2073 1h3z_A) 0.3636 0.4998 6.5689 ( 0 4 6) 0 0.3636 0.4998 11 8 ( 2334 1hyo_A) ( 2334 1hyo_A) 1.0000 1.0000 0.0000 ( 0 49 55) 0 1.0000 1.0000 11 11 ( 2334 1hyo_A) ( 2363 1i1j_A) 0.4545 0.6250 2.3954 ( 0 9 10) 0 0.4545 0.6250 11 8 ( 2334 1hyo_A) ( 2581 1ire_B) 0.3414 0.2784 12.7768 ( 1 5 6) 0 0.3414 0.3191 11 14 ( 2334 1hyo_A) ( 2900 1jj2_A) 0.3635 0.4995 7.8488 ( 0 5 6) 0 0.3635 0.4995 11 8 ( 2334 1hyo_A) ( 2913 1jj2_P) nil ( 2334 1hyo_A) ( 2916 1jj2_S) 0.1957 0.1957 10.4925 ( 3 6 6) 0 0.1957 0.1957 11 11 ( 2334 1hyo_A) ( 3300 1khc_A) 0.3635 0.4441 8.5507 ( 0 5 6) 0 0.4474 0.5369 11 9 ( 2334 1hyo_A) ( 3303 1khi_A) nil ( 2334 1hyo_A) ( 3326 1kjw_A) 0.3523 0.4917 4.9730 ( 1 6 6) 0 0.4544 0.7133 11 7 ( 2334 1hyo_A) ( 3693 1lpl_A) 0.3192 0.3880 5.8927 ( 1 4 6) 2 0.3192 0.3880 11 6 ( 2334 1hyo_A) ( 3783 1m1f_A) 0.3801 0.4111 9.3677 ( 2 9 10) 0 0.4541 0.5544 11 9 ( 2334 1hyo_A) ( 3838 1m4z_A) 0.3419 0.2325 5.9592 ( 1 5 6) 0 0.3984 0.3222 11 17 ( 2334 1hyo_A) ( 3892 1m9s_A) nil ( 2334 1hyo_A) ( 4112 1n27_A) 0.4545 0.7143 2.3638 ( 0 9 10) 0 0.4545 0.7143 11 7 ( 2334 1hyo_A) ( 4209 1ne8_A) 0.3636 0.3999 6.0047 ( 0 6 6) 0 0.4545 0.5000 11 10 ( 2334 1hyo_A) ( 4236 1ng2_A) 0.3636 0.5710 6.7290 ( 0 6 6) 0 0.3636 0.5710 11 7 ( 2334 1hyo_A) ( 4665 1oi1_A) 0.2728 0.2970 6.6828 ( 2 6 6) 0 0.4474 0.7256 11 6 ( 2334 1hyo_A) ( 4842 1oz2_A) 0.3418 0.4666 6.9474 ( 1 5 6) 0 0.3419 0.4668 11 6 ( 2334 1hyo_A) ( 4843 1oz2_A) 0.3419 0.4666 6.6093 ( 1 5 6) 0 0.4474 0.7256 11 6 ( 2334 1hyo_A) ( 5014 1pht ) 0.3418 0.4453 7.6814 ( 1 5 6) 0 0.4473 0.6561 11 7 ( 2334 1hyo_A) ( 5548 1r4k_A) 0.3636 0.3636 6.1207 ( 0 4 6) 0 0.3636 0.3636 11 11 ( 2334 1hyo_A) ( 5668 1rl2_A) nil ( 2334 1hyo_A) ( 5805 1sf9_A) nil ( 2334 1hyo_A) ( 5957 1ub4_A) 0.3418 0.3670 6.9556 ( 1 5 6) 0 0.4472 0.4883 11 10 ( 2334 1hyo_A) ( 6009 1ug1_A) nil ( 2334 1hyo_A) ( 6325 1vyn_A) 0.4545 0.4167 2.4845 ( 0 10 10) 0 0.4545 0.4167 11 12 ( 2334 1hyo_A) ( 6391 2ahj_B) 0.4545 0.3846 2.5261 ( 0 9 10) 0 0.5412 0.4597 11 13 ( 2334 1hyo_A) ( 6604 3vub ) 0.3636 0.4998 6.1953 ( 0 6 6) 0 0.3636 0.4998 11 8 -------------------------------------------------------------------------------------------------------------------------