------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2073 1h3z_A) ( 251 1azp_A) 0.2462 0.2488 8.6729 ( 2 5 6) 0 0.2462 0.2488 8 6 ( 2073 1h3z_A) ( 340 1bb9 ) 0.6250 0.8332 2.7185 ( 0 10 10) 0 0.6250 0.8332 8 6 ( 2073 1h3z_A) ( 414 1bkb ) 0.6249 0.7142 3.5921 ( 0 8 10) 0 0.6249 0.7142 8 7 ( 2073 1h3z_A) ( 501 1c0m_A) 0.1662 0.1665 6.7366 ( 3 5 6) 0 0.5927 0.7247 8 6 ( 2073 1h3z_A) ( 1648 1fx7_A) 0.4530 0.4915 6.9760 ( 1 6 6) 0 0.4998 0.5710 8 7 ( 2073 1h3z_A) ( 1715 1g3s_A) 0.4530 0.4916 6.7840 ( 1 6 6) 0 0.4999 0.5712 8 7 ( 2073 1h3z_A) ( 2073 1h3z_A) 1.0000 1.0000 0.0000 ( 0 26 28) 0 1.0000 1.0000 8 8 ( 2073 1h3z_A) ( 2334 1hyo_A) 0.4998 0.3636 6.5689 ( 0 4 6) 0 0.4998 0.3636 8 11 ( 2073 1h3z_A) ( 2363 1i1j_A) 0.6249 0.6249 3.8511 ( 0 9 10) 0 0.6249 0.6249 8 8 ( 2073 1h3z_A) ( 2581 1ire_B) 0.3671 0.2696 6.4892 ( 1 4 6) 0 0.3671 0.2696 8 14 ( 2073 1h3z_A) ( 2900 1jj2_A) 0.7346 0.7346 5.4289 ( 1 14 15) 0 0.7346 0.7346 8 8 ( 2073 1h3z_A) ( 2913 1jj2_P) 0.6247 0.8319 5.4973 ( 0 9 10) 0 0.6247 0.8319 8 6 ( 2073 1h3z_A) ( 2916 1jj2_S) 0.4998 0.3636 6.6883 ( 0 6 6) 0 0.4998 0.3636 8 11 ( 2073 1h3z_A) ( 3300 1khc_A) 0.7494 0.6664 4.9696 ( 0 12 15) 0 0.7494 0.6664 8 9 ( 2073 1h3z_A) ( 3303 1khi_A) nil ( 2073 1h3z_A) ( 3326 1kjw_A) 0.5000 0.5714 3.0070 ( 0 6 6) 0 0.5000 0.5714 8 7 ( 2073 1h3z_A) ( 3693 1lpl_A) 0.4997 0.6655 7.0077 ( 0 5 6) 0 0.4997 0.6655 8 6 ( 2073 1h3z_A) ( 3783 1m1f_A) 0.6245 0.5553 6.1573 ( 0 8 10) 0 0.7279 0.6541 8 9 ( 2073 1h3z_A) ( 3838 1m4z_A) 0.5000 0.2353 3.6150 ( 0 6 6) 0 0.5000 0.2353 8 17 ( 2073 1h3z_A) ( 3892 1m9s_A) 0.6249 0.8331 3.6176 ( 0 8 10) 0 0.6249 0.8331 8 6 ( 2073 1h3z_A) ( 4112 1n27_A) 0.8563 0.9649 2.8877 ( 1 16 21) 0 0.8563 0.9649 8 7 ( 2073 1h3z_A) ( 4209 1ne8_A) 0.5000 0.4000 3.7384 ( 0 5 6) 0 0.5000 0.4000 8 10 ( 2073 1h3z_A) ( 4236 1ng2_A) 0.6250 0.7142 3.2216 ( 0 10 10) 0 0.6250 0.7142 8 7 ( 2073 1h3z_A) ( 4665 1oi1_A) 0.4999 0.6661 5.8579 ( 0 5 6) 0 0.6247 0.8321 8 6 ( 2073 1h3z_A) ( 4842 1oz2_A) 0.4999 0.6661 5.8254 ( 0 4 6) 0 0.6248 0.8324 8 6 ( 2073 1h3z_A) ( 4843 1oz2_A) 0.6248 0.8325 4.8821 ( 0 9 10) 0 0.6248 0.8325 8 6 ( 2073 1h3z_A) ( 5014 1pht ) 0.6249 0.7141 3.7289 ( 0 10 10) 0 0.6249 0.7141 8 7 ( 2073 1h3z_A) ( 5548 1r4k_A) 0.6250 0.4545 2.4451 ( 0 9 10) 0 0.6250 0.4545 8 11 ( 2073 1h3z_A) ( 5668 1rl2_A) 0.6248 0.7138 4.9815 ( 0 10 10) 0 0.6248 0.7138 8 7 ( 2073 1h3z_A) ( 5805 1sf9_A) nil ( 2073 1h3z_A) ( 5957 1ub4_A) 0.6248 0.4999 4.8264 ( 0 9 10) 0 0.7351 0.5950 8 10 ( 2073 1h3z_A) ( 6009 1ug1_A) 0.6250 0.8332 2.9260 ( 0 10 10) 0 0.7499 0.9997 8 6 ( 2073 1h3z_A) ( 6325 1vyn_A) 0.6250 0.4167 2.4284 ( 0 10 10) 0 0.6250 0.4167 8 12 ( 2073 1h3z_A) ( 6391 2ahj_B) 0.6249 0.3846 4.2811 ( 0 9 10) 0 0.6249 0.3846 8 13 ( 2073 1h3z_A) ( 6604 3vub ) 0.5000 0.5000 4.2881 ( 0 6 6) 0 0.6250 0.6250 8 8 -------------------------------------------------------------------------------------------------------------------------