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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5712 1rwh_A)  (  555 1cb8_A)     0.7499   0.8998   3.0323 (   0   19   36)   0     0.7499   0.8998   12  10
( 5712 1rwh_A)  ( 1364 1f1s_A)     0.6666   0.9992   3.7701 (   0    9   28)   0     0.6666   0.9992   12   8
( 5712 1rwh_A)  ( 2244 1hn0_A)     0.9158   0.9987   2.3258 (   1   38   55)   0     0.9158   0.9987   12  11
( 5712 1rwh_A)  ( 2690 1j0m_A)     0.9999   0.9999   1.6767 (   0   41   66)   0     0.9999   0.9999   12  12
( 5712 1rwh_A)  ( 4154 1n7o_A)     0.5833   0.9998   2.5276 (   0    8   21)   0     0.5833   0.9998   12   7
( 5712 1rwh_A)  ( 5712 1rwh_A)     1.0000   1.0000   0.0000 (   0   53   66)   0     1.0000   1.0000   12  12

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