------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4142 1n67_A) ( 34 1a3q_A) 0.3845 0.4995 7.8697 ( 0 7 10) 0 0.5330 0.6807 13 10 ( 4142 1n67_A) ( 159 1amx ) 0.5384 0.5000 4.2293 ( 0 4 21) 0 0.5477 0.5397 13 14 ( 4142 1n67_A) ( 169 1aoh_A) 0.4615 0.5453 5.6172 ( 0 8 15) 0 0.6029 0.6234 13 11 ( 4142 1n67_A) ( 245 1ayo_A) 0.6153 0.7271 3.7472 ( 0 12 28) 0 0.6903 0.8137 13 11 ( 4142 1n67_A) ( 374 1bg1_A) 0.4580 0.3326 5.2290 ( 1 11 15) 0 0.6618 0.4935 13 18 ( 4142 1n67_A) ( 1008 1e2w_A) 0.5384 0.6999 3.1103 ( 0 8 21) 0 0.5384 0.6999 13 10 ( 4142 1n67_A) ( 1040 1e5c_A) 0.3846 0.6248 5.1110 ( 0 5 10) 0 0.3846 0.6248 13 8 ( 4142 1n67_A) ( 1087 1eaq_A) 0.3077 0.3636 5.7760 ( 0 3 6) 0 0.6139 0.7238 13 11 ( 4142 1n67_A) ( 1300 1exh ) 0.7685 0.9974 5.1274 ( 0 25 45) 0 0.7685 0.9974 13 10 ( 4142 1n67_A) ( 1351 1f0l_A) 0.4615 0.3750 3.8721 ( 0 12 15) 0 0.8313 0.6821 13 16 ( 4142 1n67_A) ( 1689 1g1k_A) 0.3846 0.3846 4.2677 ( 0 4 10) 0 0.7678 0.7678 13 13 ( 4142 1n67_A) ( 1760 1g87_A) 0.3846 0.4544 6.6174 ( 0 4 10) 0 0.6920 0.8175 13 11 ( 4142 1n67_A) ( 2097 1h6f_A) 0.3076 0.2857 8.9039 ( 0 4 6) 0 0.3076 0.2857 13 14 ( 4142 1n67_A) ( 2375 1i31_A) 0.3846 0.2941 5.5387 ( 0 3 10) 0 0.6148 0.4704 13 17 ( 4142 1n67_A) ( 2769 1j8r_A) 0.3833 0.3562 14.2319 ( 0 6 10) 0 0.4577 0.4259 13 14 ( 4142 1n67_A) ( 3343 1klf_B) 0.3846 0.3846 3.8842 ( 0 6 10) 0 0.3846 0.3846 13 13 ( 4142 1n67_A) ( 3344 1klf_B) 0.3698 0.5142 6.8109 ( 1 6 10) 0 0.5271 0.7752 13 8 ( 4142 1n67_A) ( 3803 1m2o_A) 0.3077 0.3333 4.0807 ( 0 4 6) 0 0.5380 0.5827 13 12 ( 4142 1n67_A) ( 3986 1mnn_A) 0.3077 0.1818 7.0183 ( 0 3 6) 0 0.6089 0.3632 13 22 ( 4142 1n67_A) ( 4098 1n12_A) 0.3846 0.6248 5.0600 ( 0 3 10) 0 0.5853 0.8733 13 8 ( 4142 1n67_A) ( 4141 1n67_A) 0.3846 0.4544 6.1452 ( 0 6 10) 0 0.7619 0.8925 13 11 ( 4142 1n67_A) ( 4142 1n67_A) 1.0000 1.0000 0.0000 ( 0 57 78) 0 1.0000 1.0000 13 13 ( 4142 1n67_A) ( 4187 1nbc_A) 0.7676 0.9054 6.2858 ( 0 31 45) 0 0.7676 0.9054 13 11 ( 4142 1n67_A) ( 4232 1nfi_A) 0.3844 0.6221 9.4956 ( 0 8 10) 0 0.5359 0.8478 13 8 ( 4142 1n67_A) ( 4570 1o9w_A) 0.4614 0.4000 5.9456 ( 0 7 15) 0 0.6078 0.5296 13 15 ( 4142 1n67_A) ( 4910 1p5v_B) 0.3844 0.7104 8.6379 ( 0 3 10) 0 0.4573 0.7104 13 7 ( 4142 1n67_A) ( 4922 1p7h_L) 0.4612 0.5447 7.9530 ( 0 7 15) 0 0.6898 0.8124 13 11 ( 4142 1n67_A) ( 4976 1pd1_A) 0.3845 0.4165 8.0846 ( 0 4 10) 0 0.6150 0.6660 13 12 ( 4142 1n67_A) ( 4985 1pdk_B) 0.3844 0.5542 9.0214 ( 0 4 10) 0 0.4614 0.6658 13 9 ( 4142 1n67_A) ( 5278 1qba ) 0.3846 0.4545 5.8292 ( 0 7 10) 0 0.5383 0.6361 13 11 ( 4142 1n67_A) ( 5520 1r17_A) 0.3845 0.4165 8.1074 ( 0 5 10) 0 0.5162 0.5278 13 12 ( 4142 1n67_A) ( 5521 1r17_A) 0.7689 0.9084 4.2035 ( 0 28 45) 0 0.7689 0.9084 13 11 ( 4142 1n67_A) ( 6068 1uol_A) 0.7668 0.7668 5.4858 ( 1 26 45) 0 0.7689 0.7689 13 13 ( 4142 1n67_A) ( 6119 1uur_A) 0.3845 0.3333 8.1857 ( 0 5 10) 0 0.4615 0.4000 13 15 -------------------------------------------------------------------------------------------------------------------------