------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 169 1aoh_A) ( 34 1a3q_A) 0.3636 0.4000 4.9733 ( 0 2 6) 0 0.4487 0.4540 11 10 ( 169 1aoh_A) ( 159 1amx ) 0.7265 0.5712 5.5887 ( 0 9 28) 0 0.7633 0.6246 11 14 ( 169 1aoh_A) ( 169 1aoh_A) 1.0000 1.0000 0.0000 ( 0 31 55) 0 1.0000 1.0000 11 11 ( 169 1aoh_A) ( 245 1ayo_A) 0.8176 0.8176 4.5009 ( 0 14 36) 0 0.8176 0.8176 11 11 ( 169 1aoh_A) ( 374 1bg1_A) 0.4544 0.2778 6.9361 ( 0 4 10) 0 0.8046 0.4988 11 18 ( 169 1aoh_A) ( 1008 1e2w_A) 0.6362 0.6998 4.1281 ( 0 9 21) 0 0.6362 0.6998 11 10 ( 169 1aoh_A) ( 1040 1e5c_A) 0.5453 0.7495 4.8842 ( 0 4 15) 0 0.5453 0.7495 11 8 ( 169 1aoh_A) ( 1087 1eaq_A) 0.4544 0.4544 6.0967 ( 0 3 10) 0 0.6360 0.6360 11 11 ( 169 1aoh_A) ( 1300 1exh ) 0.9084 0.9989 4.1694 ( 0 25 45) 0 0.9084 0.9989 11 10 ( 169 1aoh_A) ( 1351 1f0l_A) 0.5450 0.3749 7.1603 ( 0 7 15) 0 0.7244 0.4995 11 16 ( 169 1aoh_A) ( 1689 1g1k_A) 0.9998 0.8461 2.5592 ( 0 27 55) 0 0.9998 0.8461 11 13 ( 169 1aoh_A) ( 1760 1g87_A) 0.6350 0.6350 7.7260 ( 0 9 21) 0 0.6350 0.6350 11 11 ( 169 1aoh_A) ( 2097 1h6f_A) 0.4545 0.3571 5.1596 ( 0 5 10) 0 0.4545 0.3571 11 14 ( 169 1aoh_A) ( 2375 1i31_A) 0.4544 0.2941 7.1454 ( 0 2 10) 0 0.8061 0.5280 11 17 ( 169 1aoh_A) ( 2769 1j8r_A) 0.8160 0.6422 6.2768 ( 0 17 36) 0 0.9031 0.7125 11 14 ( 169 1aoh_A) ( 3343 1klf_B) 0.6360 0.5383 5.4508 ( 0 12 21) 0 0.7994 0.6839 11 13 ( 169 1aoh_A) ( 3344 1klf_B) 0.4545 0.6249 4.3983 ( 0 4 10) 0 0.4545 0.6249 11 8 ( 169 1aoh_A) ( 3803 1m2o_A) 0.5453 0.4999 5.5421 ( 0 5 15) 0 0.7263 0.6660 11 12 ( 169 1aoh_A) ( 3986 1mnn_A) 0.3636 0.1818 6.3768 ( 0 3 6) 0 0.6241 0.3418 11 22 ( 169 1aoh_A) ( 4098 1n12_A) 0.6361 0.8739 4.8881 ( 0 13 21) 0 0.6361 0.8739 11 8 ( 169 1aoh_A) ( 4141 1n67_A) 0.6360 0.6360 5.5519 ( 0 7 21) 0 0.6360 0.6360 11 11 ( 169 1aoh_A) ( 4142 1n67_A) 0.5451 0.4614 6.4531 ( 0 8 15) 0 0.6234 0.6029 11 13 ( 169 1aoh_A) ( 4187 1nbc_A) 0.4545 0.4545 4.7580 ( 0 5 10) 0 0.4545 0.4545 11 11 ( 169 1aoh_A) ( 4232 1nfi_A) 0.3636 0.4999 4.6144 ( 0 3 6) 0 0.5447 0.7462 11 8 ( 169 1aoh_A) ( 4570 1o9w_A) 0.9042 0.6656 6.7755 ( 0 20 45) 0 0.9042 0.6656 11 15 ( 169 1aoh_A) ( 4910 1p5v_B) 0.5454 0.8569 3.4718 ( 0 6 15) 0 0.6361 0.9979 11 7 ( 169 1aoh_A) ( 4922 1p7h_L) 0.6355 0.6355 6.7924 ( 0 9 21) 0 0.8144 0.8144 11 11 ( 169 1aoh_A) ( 4976 1pd1_A) 0.7262 0.6660 6.0383 ( 0 12 28) 0 0.7262 0.6660 11 12 ( 169 1aoh_A) ( 4985 1pdk_B) 0.5451 0.6658 6.4531 ( 0 6 15) 0 0.5454 0.6665 11 9 ( 169 1aoh_A) ( 5278 1qba ) 0.7261 0.7261 6.2617 ( 0 15 28) 0 0.7261 0.7261 11 11 ( 169 1aoh_A) ( 5520 1r17_A) 0.5448 0.4996 7.7381 ( 0 7 15) 0 0.9005 0.8278 11 12 ( 169 1aoh_A) ( 5521 1r17_A) 0.5449 0.5449 7.5528 ( 0 6 15) 0 0.5449 0.5449 11 11 ( 169 1aoh_A) ( 6068 1uol_A) 0.9074 0.7685 5.1870 ( 0 25 45) 0 0.9074 0.7685 11 13 ( 169 1aoh_A) ( 6119 1uur_A) 0.4545 0.3333 5.9732 ( 0 3 10) 0 0.4545 0.3333 11 15 -------------------------------------------------------------------------------------------------------------------------