------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4496 1o59_A) ( 387 1bhg_A) 0.7266 0.8871 5.3992 ( 0 16 28) 0 0.7266 0.8871 11 9 ( 4496 1o59_A) ( 607 1ciy ) 0.7266 0.7989 5.4772 ( 0 18 28) 0 0.7266 0.7989 11 10 ( 4496 1o59_A) ( 700 1cx1_A) 0.7271 0.7996 4.0923 ( 0 16 28) 0 0.8160 0.8965 11 10 ( 4496 1o59_A) ( 765 1d7p_M) 0.6362 0.5384 4.1412 ( 0 15 21) 0 0.6362 0.5384 11 13 ( 4496 1o59_A) ( 1271 1eut ) 0.7210 0.8723 4.3394 ( 1 17 28) 0 0.7210 0.8723 11 9 ( 4496 1o59_A) ( 1884 1gny_A) 0.5454 0.4615 4.5182 ( 0 11 15) 0 0.5454 0.5106 11 13 ( 4496 1o59_A) ( 1918 1gqp_A) 0.9001 0.6647 4.8144 ( 1 21 45) 0 0.9001 0.6647 11 15 ( 4496 1o59_A) ( 1954 1gu3_A) 0.7269 0.8879 4.7022 ( 0 14 28) 0 0.7269 0.8879 11 9 ( 4496 1o59_A) ( 1959 1gui_A) 0.7267 0.7267 5.1501 ( 0 13 28) 0 0.7267 0.7267 11 11 ( 4496 1o59_A) ( 1989 1gwm_A) 0.4544 0.4544 6.2384 ( 0 4 10) 0 0.7270 0.7270 11 11 ( 4496 1o59_A) ( 2116 1h6y_A) 0.7269 0.6664 4.7867 ( 0 14 28) 0 0.7269 0.6664 11 12 ( 4496 1o59_A) ( 2241 1hn0_A) 0.6363 0.5833 3.3535 ( 0 11 21) 0 0.8155 0.7483 11 12 ( 4496 1o59_A) ( 2408 1i5p_A) 0.7190 0.6612 5.6696 ( 1 16 28) 0 0.7269 0.6664 11 12 ( 4496 1o59_A) ( 2762 1j83_A) 0.6362 0.6997 4.6114 ( 0 11 21) 0 0.8162 0.8968 11 10 ( 4496 1o59_A) ( 2872 1jhj_A) 0.9039 0.7127 3.9236 ( 1 24 45) 0 0.9039 0.7127 11 14 ( 4496 1o59_A) ( 2886 1ji6_A) 0.7267 0.7990 5.2805 ( 0 17 28) 0 0.8123 0.8905 11 10 ( 4496 1o59_A) ( 3063 1ju3_A) 0.5451 0.4614 6.5451 ( 0 7 15) 0 0.5451 0.4614 11 13 ( 4496 1o59_A) ( 3098 1jz7_A) 0.5046 0.4432 6.3701 ( 4 21 36) 0 0.5991 0.4491 11 17 ( 4496 1o59_A) ( 3124 1k12_A) 0.8180 0.6922 3.5036 ( 0 26 36) 0 0.8180 0.6922 11 13 ( 4496 1o59_A) ( 3157 1k3i_A) 0.6363 0.7775 4.0590 ( 0 11 21) 0 0.7256 0.8845 11 9 ( 4496 1o59_A) ( 3170 1k45_A) 0.7261 0.7261 6.1783 ( 0 13 28) 0 0.8147 0.8147 11 11 ( 4496 1o59_A) ( 3280 1kex_A) 0.7262 0.7983 6.1104 ( 0 18 28) 0 0.7262 0.7983 11 10 ( 4496 1o59_A) ( 3297 1kgy_A) 0.5448 0.5989 7.8566 ( 0 9 15) 0 0.7269 0.7994 11 10 ( 4496 1o59_A) ( 3562 1l7l_A) 0.4544 0.7130 6.5720 ( 0 0 10) 0 0.6359 0.9958 11 7 ( 4496 1o59_A) ( 3680 1lns_A) 0.7261 0.4210 6.2646 ( 0 18 28) 0 0.7261 0.4210 11 19 ( 4496 1o59_A) ( 4423 1nx9_A) 0.5389 0.3740 8.5197 ( 1 12 15) 0 0.5389 0.3740 11 16 ( 4496 1o59_A) ( 4496 1o59_A) 1.0000 1.0000 0.0000 ( 0 43 55) 0 1.0000 1.0000 11 11 ( 4496 1o59_A) ( 4497 1o59_A) 0.8181 0.9998 2.5524 ( 0 27 36) 0 0.8181 0.9998 11 9 ( 4496 1o59_A) ( 4599 1od3_A) 0.7268 0.7993 4.8781 ( 0 16 28) 0 0.7716 0.8293 11 10 ( 4496 1o59_A) ( 4654 1oh4_A) 0.7266 0.5332 5.3394 ( 0 18 28) 0 0.7267 0.5332 11 15 ( 4496 1o59_A) ( 4929 1p8j_A) 0.7263 0.9952 5.9743 ( 0 17 28) 0 0.7263 0.9952 11 8 ( 4496 1o59_A) ( 5569 1r64_A) 0.6363 0.6363 3.8298 ( 0 11 21) 0 0.7201 0.7201 11 11 ( 4496 1o59_A) ( 6050 1umh_A) 0.7268 0.6664 4.8725 ( 0 5 28) 0 0.7268 0.6664 11 12 ( 4496 1o59_A) ( 6140 1uxz_A) 0.7272 0.6153 3.3816 ( 0 16 28) 0 0.7272 0.6153 11 13 ( 4496 1o59_A) ( 6347 1xna_A) 0.8180 0.8180 3.5435 ( 0 21 36) 0 0.8180 0.8180 11 11 -------------------------------------------------------------------------------------------------------------------------