------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4423 1nx9_A) ( 387 1bhg_A) 0.4667 0.6218 6.2541 ( 3 20 28) 0 0.4667 0.6656 16 9 ( 4423 1nx9_A) ( 607 1ciy ) 0.5622 0.8974 4.3623 ( 1 30 36) 0 0.5622 0.8974 16 10 ( 4423 1nx9_A) ( 700 1cx1_A) 0.3125 0.4999 5.5106 ( 0 6 10) 0 0.5032 0.7943 16 10 ( 4423 1nx9_A) ( 765 1d7p_M) 0.3125 0.3846 5.3560 ( 0 9 10) 0 0.5581 0.6802 16 13 ( 4423 1nx9_A) ( 1271 1eut ) 0.5620 0.9915 6.0516 ( 1 29 36) 0 0.5620 0.9915 16 9 ( 4423 1nx9_A) ( 1884 1gny_A) 0.6250 0.7691 3.3446 ( 0 39 45) 0 0.6250 0.7691 16 13 ( 4423 1nx9_A) ( 1918 1gqp_A) 0.2572 0.2644 8.9986 ( 2 6 10) 0 0.5073 0.5285 16 15 ( 4423 1nx9_A) ( 1954 1gu3_A) 0.5000 0.8883 4.0531 ( 0 16 28) 0 0.5510 0.8883 16 9 ( 4423 1nx9_A) ( 1959 1gui_A) 0.3125 0.4544 6.7824 ( 0 4 10) 0 0.5437 0.6298 16 11 ( 4423 1nx9_A) ( 1989 1gwm_A) 0.3125 0.4545 5.0715 ( 0 2 10) 0 0.6425 0.8148 16 11 ( 4423 1nx9_A) ( 2116 1h6y_A) 0.3124 0.4164 8.3366 ( 0 6 10) 0 0.6240 0.8291 16 12 ( 4423 1nx9_A) ( 2241 1hn0_A) 0.6247 0.8322 3.5946 ( 1 33 45) 0 0.6247 0.8322 16 12 ( 4423 1nx9_A) ( 2408 1i5p_A) 0.3125 0.4165 8.0397 ( 0 8 10) 0 0.6212 0.8178 16 12 ( 4423 1nx9_A) ( 2762 1j83_A) 0.5000 0.7996 4.2190 ( 0 18 28) 0 0.5249 0.7996 16 10 ( 4423 1nx9_A) ( 2872 1jhj_A) 0.3125 0.3571 7.0397 ( 0 6 10) 0 0.6164 0.6662 16 14 ( 4423 1nx9_A) ( 2886 1ji6_A) 0.3380 0.3480 5.3459 ( 8 28 36) 0 0.5619 0.8937 16 10 ( 4423 1nx9_A) ( 3063 1ju3_A) 0.8115 0.9973 3.3050 ( 2 65 78) 0 0.8115 0.9973 16 13 ( 4423 1nx9_A) ( 3098 1jz7_A) 0.4998 0.4704 6.3158 ( 0 18 28) 0 0.6089 0.5761 16 17 ( 4423 1nx9_A) ( 3124 1k12_A) 0.3125 0.3845 7.3732 ( 0 5 10) 0 0.6668 0.7926 16 13 ( 4423 1nx9_A) ( 3157 1k3i_A) 0.5619 0.9903 5.8459 ( 1 26 36) 0 0.5619 0.9903 16 9 ( 4423 1nx9_A) ( 3170 1k45_A) 0.3124 0.4542 8.4028 ( 0 6 10) 0 0.6237 0.9007 16 11 ( 4423 1nx9_A) ( 3280 1kex_A) 0.3125 0.4999 4.5450 ( 0 8 10) 0 0.6204 0.9558 16 10 ( 4423 1nx9_A) ( 3297 1kgy_A) 0.5620 0.8948 4.4063 ( 1 24 36) 0 0.5623 0.8979 16 10 ( 4423 1nx9_A) ( 3562 1l7l_A) 0.3124 0.7103 8.6983 ( 0 3 10) 0 0.4282 0.8567 16 7 ( 4423 1nx9_A) ( 3680 1lns_A) 0.8084 0.6825 3.9461 ( 3 66 78) 0 0.8084 0.6825 16 19 ( 4423 1nx9_A) ( 4423 1nx9_A) 1.0000 1.0000 0.0000 ( 0 110 120) 0 1.0000 1.0000 16 16 ( 4423 1nx9_A) ( 4496 1o59_A) 0.3736 0.5366 8.4304 ( 1 11 15) 0 0.3736 0.5366 16 11 ( 4423 1nx9_A) ( 4497 1o59_A) 0.4998 0.8861 6.0530 ( 0 22 28) 0 0.5000 0.8882 16 9 ( 4423 1nx9_A) ( 4599 1od3_A) 0.3125 0.5000 4.4232 ( 0 8 10) 0 0.4429 0.5000 16 10 ( 4423 1nx9_A) ( 4654 1oh4_A) 0.3748 0.3998 8.9323 ( 0 12 15) 0 0.5523 0.5733 16 15 ( 4423 1nx9_A) ( 4929 1p8j_A) 0.4999 0.9973 5.1734 ( 0 20 28) 0 0.4999 0.9979 16 8 ( 4423 1nx9_A) ( 5569 1r64_A) 0.5579 0.7904 6.6085 ( 2 27 36) 0 0.5579 0.7904 16 11 ( 4423 1nx9_A) ( 6050 1umh_A) 0.3124 0.4164 8.8086 ( 0 3 10) 0 0.5029 0.5806 16 12 ( 4423 1nx9_A) ( 6140 1uxz_A) 0.6223 0.7617 4.8316 ( 2 35 45) 0 0.6848 0.8386 16 13 ( 4423 1nx9_A) ( 6347 1xna_A) 0.4375 0.6362 4.3035 ( 0 12 21) 0 0.4777 0.6362 16 11 -------------------------------------------------------------------------------------------------------------------------