------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3098 1jz7_A) ( 387 1bhg_A) 0.4706 0.8888 2.4808 ( 0 20 28) 0 0.4706 0.8888 17 9 ( 3098 1jz7_A) ( 607 1ciy ) 0.3529 0.5991 7.3692 ( 0 8 15) 0 0.5866 0.9778 17 10 ( 3098 1jz7_A) ( 700 1cx1_A) 0.4706 0.7996 4.3433 ( 0 19 28) 0 0.4706 0.7996 17 10 ( 3098 1jz7_A) ( 765 1d7p_M) 0.3601 0.3838 7.3105 ( 5 20 28) 0 0.4117 0.5381 17 13 ( 3098 1jz7_A) ( 1271 1eut ) 0.4705 0.8877 4.9122 ( 0 21 28) 0 0.4705 0.8877 17 9 ( 3098 1jz7_A) ( 1884 1gny_A) 0.5879 0.7679 5.9879 ( 0 37 45) 0 0.5879 0.7679 17 13 ( 3098 1jz7_A) ( 1918 1gqp_A) 0.5600 0.6174 7.3938 ( 3 26 45) 0 0.5600 0.6174 17 15 ( 3098 1jz7_A) ( 1954 1gu3_A) 0.4705 0.8868 5.6432 ( 0 15 28) 0 0.4705 0.8868 17 9 ( 3098 1jz7_A) ( 1959 1gui_A) 0.5293 0.8173 5.0760 ( 0 22 36) 0 0.5293 0.8173 17 11 ( 3098 1jz7_A) ( 1989 1gwm_A) 0.5877 0.9043 6.0403 ( 1 31 45) 0 0.5878 0.9052 17 11 ( 3098 1jz7_A) ( 2116 1h6y_A) 0.3528 0.4992 9.1225 ( 0 9 15) 0 0.5850 0.8156 17 12 ( 3098 1jz7_A) ( 2241 1hn0_A) 0.2941 0.4165 7.7703 ( 0 7 10) 0 0.5585 0.7349 17 12 ( 3098 1jz7_A) ( 2408 1i5p_A) 0.3529 0.4997 7.2077 ( 0 11 15) 0 0.5878 0.8309 17 12 ( 3098 1jz7_A) ( 2762 1j83_A) 0.4705 0.7985 5.9034 ( 0 21 28) 0 0.5292 0.8964 17 10 ( 3098 1jz7_A) ( 2872 1jhj_A) 0.5293 0.6424 5.6055 ( 0 23 36) 0 0.5293 0.6424 17 14 ( 3098 1jz7_A) ( 2886 1ji6_A) 0.5293 0.8988 4.7812 ( 0 27 36) 0 0.5864 0.9749 17 10 ( 3098 1jz7_A) ( 3063 1ju3_A) 0.4415 0.4681 5.1880 ( 7 34 45) 0 0.5315 0.6140 17 13 ( 3098 1jz7_A) ( 3098 1jz7_A) 1.0000 1.0000 0.0000 ( 0 119 136) 0 1.0000 1.0000 17 17 ( 3098 1jz7_A) ( 3124 1k12_A) 0.5293 0.6917 5.5684 ( 0 27 36) 0 0.6388 0.8164 17 13 ( 3098 1jz7_A) ( 3157 1k3i_A) 0.4705 0.8874 5.1449 ( 0 17 28) 0 0.4705 0.8874 17 9 ( 3098 1jz7_A) ( 3170 1k45_A) 0.5292 0.8165 5.9273 ( 0 22 36) 0 0.5292 0.8165 17 11 ( 3098 1jz7_A) ( 3280 1kex_A) 0.4704 0.7970 7.0316 ( 0 20 28) 0 0.4704 0.7970 17 10 ( 3098 1jz7_A) ( 3297 1kgy_A) 0.2941 0.4997 6.8588 ( 0 7 10) 0 0.5878 0.9934 17 10 ( 3098 1jz7_A) ( 3562 1l7l_A) 0.2941 0.7137 5.4703 ( 0 3 10) 0 0.4117 0.9974 17 7 ( 3098 1jz7_A) ( 3680 1lns_A) 0.5777 0.5202 5.8559 ( 3 34 45) 0 0.5777 0.5202 17 19 ( 3098 1jz7_A) ( 4423 1nx9_A) 0.4704 0.4998 6.3158 ( 0 18 28) 0 0.5761 0.6089 17 16 ( 3098 1jz7_A) ( 4496 1o59_A) 0.3528 0.5445 8.5450 ( 0 9 15) 0 0.4491 0.5991 17 11 ( 3098 1jz7_A) ( 4497 1o59_A) 0.4706 0.8883 4.1314 ( 0 21 28) 0 0.4706 0.8883 17 9 ( 3098 1jz7_A) ( 4599 1od3_A) 0.5293 0.8985 5.0645 ( 0 27 36) 0 0.5293 0.8985 17 10 ( 3098 1jz7_A) ( 4654 1oh4_A) 0.5875 0.6653 7.2479 ( 0 36 45) 0 0.5875 0.6653 17 15 ( 3098 1jz7_A) ( 4929 1p8j_A) 0.4706 0.9986 4.3422 ( 0 19 28) 0 0.4706 0.9986 17 8 ( 3098 1jz7_A) ( 5569 1r64_A) 0.4932 0.6285 5.1108 ( 4 28 36) 0 0.4932 0.7237 17 11 ( 3098 1jz7_A) ( 6050 1umh_A) 0.5782 0.7824 6.2260 ( 2 23 45) 0 0.5782 0.7824 17 12 ( 3098 1jz7_A) ( 6140 1uxz_A) 0.5880 0.7685 5.1816 ( 0 34 45) 0 0.5880 0.7685 17 13 ( 3098 1jz7_A) ( 6347 1xna_A) 0.4706 0.7270 4.4031 ( 0 14 28) 0 0.5211 0.7560 17 11 -------------------------------------------------------------------------------------------------------------------------