------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1959 1gui_A) ( 387 1bhg_A) 0.7266 0.8871 5.4355 ( 0 14 28) 0 0.7266 0.8871 11 9 ( 1959 1gui_A) ( 607 1ciy ) 0.8139 0.8931 4.2372 ( 1 22 36) 0 0.8139 0.8931 11 10 ( 1959 1gui_A) ( 700 1cx1_A) 0.6363 0.6999 3.0569 ( 0 10 21) 0 0.7312 0.7737 11 10 ( 1959 1gui_A) ( 765 1d7p_M) 0.5193 0.4495 5.0008 ( 1 8 15) 0 0.7552 0.6624 11 13 ( 1959 1gui_A) ( 1271 1eut ) 0.7268 0.8876 4.9379 ( 0 15 28) 0 0.7268 0.8876 11 9 ( 1959 1gui_A) ( 1884 1gny_A) 0.7266 0.6151 5.4202 ( 0 17 28) 0 0.7266 0.6151 11 13 ( 1959 1gui_A) ( 1918 1gqp_A) 0.6358 0.4665 6.1359 ( 0 8 21) 0 0.7080 0.5290 11 15 ( 1959 1gui_A) ( 1954 1gu3_A) 0.8180 0.9994 3.5495 ( 0 20 36) 0 0.8180 0.9994 11 9 ( 1959 1gui_A) ( 1959 1gui_A) 1.0000 1.0000 0.0000 ( 0 39 55) 0 1.0000 1.0000 11 11 ( 1959 1gui_A) ( 1989 1gwm_A) 0.7269 0.7269 4.8246 ( 0 13 28) 0 0.7976 0.7976 11 11 ( 1959 1gui_A) ( 2116 1h6y_A) 0.9087 0.8331 3.6102 ( 0 25 45) 0 0.9087 0.8331 11 12 ( 1959 1gui_A) ( 2241 1hn0_A) 0.7271 0.6666 3.6731 ( 0 16 28) 0 0.7271 0.6666 11 12 ( 1959 1gui_A) ( 2408 1i5p_A) 0.8142 0.7474 2.8711 ( 1 22 36) 0 0.9058 0.8312 11 12 ( 1959 1gui_A) ( 2762 1j83_A) 0.5439 0.5975 9.5884 ( 0 8 15) 0 0.8156 0.8959 11 10 ( 1959 1gui_A) ( 2872 1jhj_A) 0.6360 0.4999 5.6305 ( 0 8 21) 0 0.6360 0.4999 11 14 ( 1959 1gui_A) ( 2886 1ji6_A) 0.8139 0.8932 4.1252 ( 1 22 36) 0 0.8139 0.8932 11 10 ( 1959 1gui_A) ( 3063 1ju3_A) 0.5451 0.4614 6.8189 ( 0 6 15) 0 0.7278 0.6702 11 13 ( 1959 1gui_A) ( 3098 1jz7_A) 0.8173 0.5293 5.0760 ( 0 22 36) 0 0.8173 0.5293 11 17 ( 1959 1gui_A) ( 3124 1k12_A) 0.7266 0.6151 5.3766 ( 0 14 28) 0 0.9012 0.7658 11 13 ( 1959 1gui_A) ( 3157 1k3i_A) 0.7268 0.8875 5.0461 ( 0 13 28) 0 0.7268 0.8875 11 9 ( 1959 1gui_A) ( 3170 1k45_A) 0.9089 0.9089 2.9874 ( 0 25 45) 0 0.9089 0.9089 11 11 ( 1959 1gui_A) ( 3280 1kex_A) 0.7252 0.7966 7.2262 ( 0 15 28) 0 0.7252 0.7966 11 10 ( 1959 1gui_A) ( 3297 1kgy_A) 0.4545 0.5000 4.4924 ( 0 7 10) 0 0.8152 0.8952 11 10 ( 1959 1gui_A) ( 3562 1l7l_A) 0.5186 0.5818 5.4433 ( 1 6 21) 0 0.5452 0.8549 11 7 ( 1959 1gui_A) ( 3680 1lns_A) 0.3636 0.2105 6.3163 ( 0 3 6) 0 0.6455 0.4547 11 19 ( 1959 1gui_A) ( 4423 1nx9_A) 0.4544 0.3125 6.7824 ( 0 4 10) 0 0.7581 0.5924 11 16 ( 1959 1gui_A) ( 4496 1o59_A) 0.7267 0.7267 5.1501 ( 0 13 28) 0 0.7267 0.7267 11 11 ( 1959 1gui_A) ( 4497 1o59_A) 0.7270 0.8881 4.4176 ( 0 15 28) 0 0.7270 0.8881 11 9 ( 1959 1gui_A) ( 4599 1od3_A) 0.9059 0.9949 3.2332 ( 1 27 45) 0 0.9059 0.9949 11 10 ( 1959 1gui_A) ( 4654 1oh4_A) 0.5453 0.4000 5.4456 ( 0 8 15) 0 0.8125 0.5988 11 15 ( 1959 1gui_A) ( 4929 1p8j_A) 0.6363 0.8746 3.8164 ( 0 8 21) 0 0.6363 0.8746 11 8 ( 1959 1gui_A) ( 5569 1r64_A) 0.7173 0.7173 4.1230 ( 1 15 28) 0 0.7236 0.7236 11 11 ( 1959 1gui_A) ( 6050 1umh_A) 0.8980 0.8261 5.1809 ( 1 20 45) 0 0.8980 0.8261 11 12 ( 1959 1gui_A) ( 6140 1uxz_A) 0.9079 0.7687 4.7036 ( 0 27 45) 0 0.9079 0.7687 11 13 ( 1959 1gui_A) ( 6347 1xna_A) 0.7271 0.7271 4.0617 ( 0 9 28) 0 0.7271 0.7271 11 11 -------------------------------------------------------------------------------------------------------------------------