------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1954 1gu3_A) ( 387 1bhg_A) 0.8851 0.8851 6.5069 ( 0 14 28) 0 0.8869 0.8869 9 9 ( 1954 1gu3_A) ( 607 1ciy ) 0.8725 0.7902 3.9945 ( 1 17 28) 0 0.8856 0.7981 9 10 ( 1954 1gu3_A) ( 700 1cx1_A) 0.9989 0.8993 4.1297 ( 0 21 36) 0 0.9989 0.8993 9 10 ( 1954 1gu3_A) ( 765 1d7p_M) 0.6662 0.4615 5.4053 ( 0 7 15) 0 0.6662 0.4615 9 13 ( 1954 1gu3_A) ( 1271 1eut ) 0.8877 0.8877 4.9063 ( 0 15 28) 0 0.8877 0.8877 9 9 ( 1954 1gu3_A) ( 1884 1gny_A) 0.8884 0.6153 3.9690 ( 0 18 28) 0 0.8884 0.6153 9 13 ( 1954 1gu3_A) ( 1918 1gqp_A) 0.8862 0.5331 5.9788 ( 0 12 28) 0 0.9941 0.5995 9 15 ( 1954 1gu3_A) ( 1954 1gu3_A) 1.0000 1.0000 0.0000 ( 0 24 36) 0 1.0000 1.0000 9 9 ( 1954 1gu3_A) ( 1959 1gui_A) 0.9994 0.8180 3.5495 ( 0 20 36) 0 0.9994 0.8180 9 11 ( 1954 1gu3_A) ( 1989 1gwm_A) 0.9990 0.8178 4.0500 ( 0 23 36) 0 0.9990 0.8178 9 11 ( 1954 1gu3_A) ( 2116 1h6y_A) 0.9994 0.7498 3.5900 ( 0 22 36) 0 0.9994 0.7498 9 12 ( 1954 1gu3_A) ( 2241 1hn0_A) 0.6449 0.4945 6.8840 ( 1 11 15) 0 0.7770 0.5832 9 12 ( 1954 1gu3_A) ( 2408 1i5p_A) 0.8846 0.6656 6.7331 ( 0 13 28) 0 0.8879 0.6664 9 12 ( 1954 1gu3_A) ( 2762 1j83_A) 0.7771 0.6996 5.0268 ( 0 13 21) 0 0.9955 0.8973 9 10 ( 1954 1gu3_A) ( 2872 1jhj_A) 0.8873 0.5713 5.2305 ( 0 12 28) 0 0.8873 0.5713 9 14 ( 1954 1gu3_A) ( 2886 1ji6_A) 0.7355 0.6739 3.3559 ( 1 11 21) 0 0.8871 0.7989 9 10 ( 1954 1gu3_A) ( 3063 1ju3_A) 0.5555 0.3846 3.9583 ( 0 3 10) 0 0.8848 0.6147 9 13 ( 1954 1gu3_A) ( 3098 1jz7_A) 0.8868 0.4705 5.6432 ( 0 15 28) 0 0.8868 0.4705 9 17 ( 1954 1gu3_A) ( 3124 1k12_A) 0.8883 0.6153 4.0826 ( 0 16 28) 0 0.8883 0.6153 9 13 ( 1954 1gu3_A) ( 3157 1k3i_A) 0.8875 0.8875 5.0218 ( 0 12 28) 0 0.8875 0.8875 9 9 ( 1954 1gu3_A) ( 3170 1k45_A) 0.9984 0.8176 4.4973 ( 0 18 36) 0 0.9984 0.8176 9 11 ( 1954 1gu3_A) ( 3280 1kex_A) 0.7766 0.6993 5.6861 ( 0 11 21) 0 0.7766 0.6993 9 10 ( 1954 1gu3_A) ( 3297 1kgy_A) 0.8884 0.7997 3.8556 ( 0 15 28) 0 0.8884 0.7997 9 10 ( 1954 1gu3_A) ( 3562 1l7l_A) 0.6959 0.7929 4.5146 ( 1 9 21) 0 0.7769 0.9969 9 7 ( 1954 1gu3_A) ( 3680 1lns_A) 0.5551 0.2631 6.7058 ( 0 3 10) 0 0.7501 0.4514 9 19 ( 1954 1gu3_A) ( 4423 1nx9_A) 0.8883 0.5000 4.0531 ( 0 16 28) 0 0.8883 0.5510 9 16 ( 1954 1gu3_A) ( 4496 1o59_A) 0.8879 0.7269 4.7022 ( 0 14 28) 0 0.8879 0.7269 9 11 ( 1954 1gu3_A) ( 4497 1o59_A) 0.8881 0.8881 4.3837 ( 0 17 28) 0 0.8881 0.8881 9 9 ( 1954 1gu3_A) ( 4599 1od3_A) 0.9869 0.8922 3.6086 ( 1 21 36) 0 0.9869 0.8922 9 10 ( 1954 1gu3_A) ( 4654 1oh4_A) 0.9977 0.5998 4.9809 ( 0 22 36) 0 0.9977 0.5998 9 15 ( 1954 1gu3_A) ( 4929 1p8j_A) 0.8833 0.9901 7.1812 ( 0 15 28) 0 0.8860 0.9949 9 8 ( 1954 1gu3_A) ( 5569 1r64_A) 0.8684 0.7195 4.0573 ( 1 16 28) 0 0.8684 0.7195 9 11 ( 1954 1gu3_A) ( 6050 1umh_A) 0.9054 0.7235 4.4263 ( 1 12 36) 0 0.9054 0.7235 9 12 ( 1954 1gu3_A) ( 6140 1uxz_A) 0.9991 0.6922 3.9433 ( 0 21 36) 0 0.9991 0.6922 9 13 ( 1954 1gu3_A) ( 6347 1xna_A) 0.8885 0.7271 3.5590 ( 0 12 28) 0 0.8885 0.7271 9 11 -------------------------------------------------------------------------------------------------------------------------