------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1884 1gny_A) ( 387 1bhg_A) 0.3845 0.5551 6.7636 ( 0 6 10) 0 0.6145 0.8833 13 9 ( 1884 1gny_A) ( 607 1ciy ) 0.7684 0.9968 4.9303 ( 1 40 45) 0 0.7684 0.9968 13 10 ( 1884 1gny_A) ( 700 1cx1_A) 0.7679 0.9952 5.9770 ( 0 35 45) 0 0.7679 0.9952 13 10 ( 1884 1gny_A) ( 765 1d7p_M) 0.5384 0.5384 4.9904 ( 0 17 21) 0 0.6268 0.6268 13 13 ( 1884 1gny_A) ( 1271 1eut ) 0.6150 0.8865 5.8200 ( 0 22 28) 0 0.6150 0.8865 13 9 ( 1884 1gny_A) ( 1884 1gny_A) 1.0000 1.0000 0.0000 ( 0 71 78) 0 1.0000 1.0000 13 13 ( 1884 1gny_A) ( 1918 1gqp_A) 0.5384 0.4666 4.7304 ( 0 12 21) 0 0.6150 0.5331 13 15 ( 1884 1gny_A) ( 1954 1gu3_A) 0.6153 0.8884 3.9690 ( 0 18 28) 0 0.6153 0.8884 13 9 ( 1884 1gny_A) ( 1959 1gui_A) 0.6151 0.7266 5.4202 ( 0 17 28) 0 0.6151 0.7266 13 11 ( 1884 1gny_A) ( 1989 1gwm_A) 0.8440 0.9950 5.7138 ( 1 40 55) 0 0.8440 0.9950 13 11 ( 1884 1gny_A) ( 2116 1h6y_A) 0.6923 0.7499 3.0879 ( 0 31 36) 0 0.7144 0.7499 13 12 ( 1884 1gny_A) ( 2241 1hn0_A) 0.8215 0.8808 4.7942 ( 3 43 55) 0 0.8215 0.8808 13 12 ( 1884 1gny_A) ( 2408 1i5p_A) 0.6138 0.6644 4.8012 ( 1 20 28) 0 0.6138 0.6644 13 12 ( 1884 1gny_A) ( 2762 1j83_A) 0.4614 0.5994 6.5784 ( 0 10 15) 0 0.6887 0.8870 13 10 ( 1884 1gny_A) ( 2872 1jhj_A) 0.6920 0.6426 4.7921 ( 0 24 36) 0 0.7234 0.6815 13 14 ( 1884 1gny_A) ( 2886 1ji6_A) 0.6915 0.8971 4.9214 ( 1 31 36) 0 0.6915 0.8971 13 10 ( 1884 1gny_A) ( 3063 1ju3_A) 0.7624 0.7624 4.7625 ( 2 36 45) 0 0.7624 0.7624 13 13 ( 1884 1gny_A) ( 3098 1jz7_A) 0.4612 0.3528 8.2103 ( 0 10 15) 0 0.7677 0.5878 13 17 ( 1884 1gny_A) ( 3124 1k12_A) 0.6915 0.6915 4.8176 ( 1 30 36) 0 0.6915 0.6915 13 13 ( 1884 1gny_A) ( 3157 1k3i_A) 0.4615 0.6663 5.0633 ( 0 9 15) 0 0.6152 0.8880 13 9 ( 1884 1gny_A) ( 3170 1k45_A) 0.6152 0.7269 4.6719 ( 0 16 28) 0 0.7665 0.9030 13 11 ( 1884 1gny_A) ( 3280 1kex_A) 0.6152 0.7994 4.6981 ( 0 22 28) 0 0.6152 0.7994 13 10 ( 1884 1gny_A) ( 3297 1kgy_A) 0.3846 0.5000 2.9754 ( 0 9 10) 0 0.4945 0.5994 13 10 ( 1884 1gny_A) ( 3562 1l7l_A) 0.5224 0.7929 4.3494 ( 1 9 21) 0 0.5224 0.8554 13 7 ( 1884 1gny_A) ( 3680 1lns_A) 0.7687 0.5262 3.7189 ( 1 37 45) 0 0.7687 0.5262 13 19 ( 1884 1gny_A) ( 4423 1nx9_A) 0.3846 0.3125 6.5091 ( 0 10 10) 0 0.5470 0.4717 13 16 ( 1884 1gny_A) ( 4496 1o59_A) 0.4615 0.5454 4.5182 ( 0 11 15) 0 0.5106 0.5454 13 11 ( 1884 1gny_A) ( 4497 1o59_A) 0.6150 0.8866 5.7233 ( 0 22 28) 0 0.6150 0.8866 13 9 ( 1884 1gny_A) ( 4599 1od3_A) 0.7611 0.9712 5.7962 ( 2 35 45) 0 0.7611 0.9712 13 10 ( 1884 1gny_A) ( 4654 1oh4_A) 0.8453 0.7329 4.7419 ( 0 46 55) 0 0.8453 0.7329 13 15 ( 1884 1gny_A) ( 4929 1p8j_A) 0.6151 0.9972 5.2067 ( 0 22 28) 0 0.6151 0.9972 13 8 ( 1884 1gny_A) ( 5569 1r64_A) 0.6914 0.8161 4.9604 ( 1 29 36) 0 0.6914 0.8161 13 11 ( 1884 1gny_A) ( 6050 1umh_A) 0.6881 0.7438 5.2996 ( 1 18 36) 0 0.6881 0.7438 13 12 ( 1884 1gny_A) ( 6140 1uxz_A) 0.4613 0.4613 7.0782 ( 0 9 15) 0 0.8207 0.8207 13 13 ( 1884 1gny_A) ( 6347 1xna_A) 0.6152 0.7269 4.6344 ( 0 16 28) 0 0.6152 0.7269 13 11 -------------------------------------------------------------------------------------------------------------------------