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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4003 1mpg_A)  ( 3274 1kea_A)     0.9987   0.8456   3.7333 (   1   46   55)   0     0.9987   0.8456   11  13
( 4003 1mpg_A)  ( 3672 1lmz_A)     0.6363   0.7777   3.0436 (   0   18   21)   0     0.6363   0.7777   11   9
( 4003 1mpg_A)  ( 3820 1m3q_A)     0.9082   0.7688   2.8393 (   1   38   45)   0     0.9082   0.7688   11  13
( 4003 1mpg_A)  ( 4003 1mpg_A)     1.0000   1.0000   0.0000 (   0   49   55)   0     1.0000   1.0000   11  11
( 4003 1mpg_A)  ( 4042 1mun  )     0.9587   0.8892   3.6492 (   3   46   55)   0     0.9587   0.8892   11  12
( 4003 1mpg_A)  ( 4242 1ngn_A)     0.6362   0.8744   4.1216 (   0   16   21)   0     0.6362   0.8744   11   8
( 4003 1mpg_A)  ( 4764 1orn_A)     0.9991   0.9161   3.1599 (   1   47   55)   0     0.9991   0.9161   11  12
( 4003 1mpg_A)  ( 5108 1pu6_A)     0.9904   0.8419   3.9652 (   2   46   55)   0     0.9904   0.8419   11  13

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