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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1606 1fqi_A)  (  125 1agr_E)     0.9973   0.9973   1.3847 (   1   31   36)   0     0.9973   0.9973    9   9
( 1606 1fqi_A)  ( 1216 1emu_A)     0.9999   0.9000   1.7993 (   0   32   36)   0     0.9999   0.9000    9  10
( 1606 1fqi_A)  ( 1606 1fqi_A)     1.0000   1.0000   0.0000 (   0   32   36)   0     1.0000   1.0000    9   9
( 1606 1fqi_A)  ( 2286 1htj_F)     0.8003   0.6901   5.3805 (   2   21   28)   0     0.8003   0.6901    9  11
( 1606 1fqi_A)  ( 2443 1iap_A)     0.8314   0.7641   4.9737 (   2   24   28)   0     0.8314   0.7641    9  10
( 1606 1fqi_A)  ( 4716 1omw_A)     0.8235   0.7589   3.0783 (   2   23   28)   0     0.8235   0.7589    9  10

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