------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 576 1cf7_A) ( 288 1b4a_A) 0.6665 0.6665 4.0597 ( 0 5 6) 0 0.6665 0.6665 6 6 ( 576 1cf7_A) ( 328 1b9m_A) 0.4668 0.3671 4.3983 ( 1 5 6) 0 0.4668 0.3967 6 10 ( 576 1cf7_A) ( 410 1bja_A) 0.4850 0.4738 1.9562 ( 2 10 10) 0 0.4850 0.4738 6 7 ( 576 1cf7_A) ( 424 1bm9_A) 0.4666 0.4666 6.4671 ( 1 5 6) 0 0.4666 0.4666 6 6 ( 576 1cf7_A) ( 509 1c20_A) nil ( 576 1cf7_A) ( 576 1cf7_A) 1.0000 1.0000 0.0000 ( 0 13 15) 0 1.0000 1.0000 6 6 ( 576 1cf7_A) ( 904 1dp7_P) 0.9270 0.8205 4.0571 ( 1 13 15) 0 0.9270 0.8205 6 7 ( 576 1cf7_A) ( 997 1e17_A) 0.6650 0.6650 7.5551 ( 0 6 6) 0 0.6650 0.6650 6 6 ( 576 1cf7_A) ( 1461 1fc3_A) nil ( 576 1cf7_A) ( 1576 1fnn_A) 0.8332 0.7142 2.8023 ( 0 9 10) 0 0.8332 0.7142 6 7 ( 576 1cf7_A) ( 1595 1fp1_D) 0.4850 0.4589 3.4103 ( 2 10 10) 0 0.4850 0.4589 6 8 ( 576 1cf7_A) ( 1597 1fp2_A) 0.7551 0.6032 3.3787 ( 1 10 10) 0 0.7551 0.6032 6 8 ( 576 1cf7_A) ( 1664 1fzp_B) nil ( 576 1cf7_A) ( 1973 1gvj_A) 0.9995 0.5454 3.3999 ( 0 12 15) 0 0.9995 0.5454 6 11 ( 576 1cf7_A) ( 1999 1gxq_A) 0.8333 0.5555 2.5742 ( 0 10 10) 0 0.8333 0.5555 6 9 ( 576 1cf7_A) ( 2162 1hbx_G) 0.9060 0.5398 3.2707 ( 1 12 15) 0 0.9060 0.5398 6 11 ( 576 1cf7_A) ( 2224 1hkq_A) 0.8408 0.5820 2.8868 ( 1 10 15) 0 0.8408 0.5820 6 10 ( 576 1cf7_A) ( 2278 1hsj_A) 0.8333 0.7143 1.8952 ( 0 8 10) 0 0.8333 0.7143 6 7 ( 576 1cf7_A) ( 2410 1i5z_A) 0.9062 0.9062 2.2489 ( 1 12 15) 0 0.9062 0.9062 6 6 ( 576 1cf7_A) ( 2482 1ig6_A) nil ( 576 1cf7_A) ( 2544 1in4_A) 0.4850 0.4738 2.3033 ( 2 10 10) 0 0.4850 0.4738 6 7 ( 576 1cf7_A) ( 2703 1j1v_A) nil ( 576 1cf7_A) ( 2862 1jgs_A) 0.4850 0.4589 1.7935 ( 2 10 10) 0 0.4850 0.4589 6 8 ( 576 1cf7_A) ( 2871 1jhg_A) nil ( 576 1cf7_A) ( 3237 1ka8_A) 0.7257 0.5930 4.7006 ( 1 9 10) 0 0.7257 0.5930 6 8 ( 576 1cf7_A) ( 3296 1kgs_A) 0.8333 0.5555 2.6254 ( 0 8 10) 0 0.8333 0.5555 6 9 ( 576 1cf7_A) ( 3338 1kkx_A) nil ( 576 1cf7_A) ( 3438 1ku9_A) 0.6639 0.4994 8.5980 ( 0 6 6) 0 0.6639 0.4994 6 8 ( 576 1cf7_A) ( 3604 1ldj_A) 0.9931 0.9931 6.5461 ( 0 13 15) 0 0.9931 0.9931 6 6 ( 576 1cf7_A) ( 3639 1lj9_A) 0.4850 0.4589 1.6574 ( 2 10 10) 0 0.4850 0.4589 6 8 ( 576 1cf7_A) ( 3681 1lnw_A) 0.4850 0.4589 1.7560 ( 2 10 10) 0 0.4850 0.4589 6 8 ( 576 1cf7_A) ( 3746 1lva_A) 0.8333 0.8333 1.9101 ( 0 9 10) 0 0.8333 0.8333 6 6 ( 576 1cf7_A) ( 3748 1lva_A) 0.8333 0.8333 2.5895 ( 0 9 10) 0 0.8333 0.8333 6 6 ( 576 1cf7_A) ( 3934 1mij_A) nil ( 576 1cf7_A) ( 3960 1mkm_A) 0.4850 0.4850 2.1674 ( 2 10 10) 0 0.4850 0.4850 6 6 ( 576 1cf7_A) ( 4082 1mzb_A) 0.6637 0.3998 8.7827 ( 0 6 6) 0 0.6637 0.3998 6 10 ( 576 1cf7_A) ( 4537 1o7f_A) 0.9267 0.6554 4.3874 ( 1 13 15) 0 0.9267 0.6554 6 9 ( 576 1cf7_A) ( 4697 1okr_A) 0.7552 0.6032 2.0518 ( 1 10 10) 0 0.7552 0.6032 6 8 ( 576 1cf7_A) ( 4714 1omi_A) 0.9994 0.5999 3.6134 ( 0 12 15) 0 0.9994 0.5999 6 10 ( 576 1cf7_A) ( 4745 1opc ) 0.7552 0.5431 2.3478 ( 1 10 10) 0 0.7552 0.5431 6 9 ( 576 1cf7_A) ( 4840 1oyw_A) 0.5288 0.3823 5.4938 ( 1 6 6) 0 0.5288 0.4204 6 10 ( 576 1cf7_A) ( 4872 1p2f_A) 0.8333 0.6250 2.2650 ( 0 9 10) 0 0.8333 0.6250 6 8 ( 576 1cf7_A) ( 4894 1p4x_A) 0.9999 0.7500 2.3027 ( 0 13 15) 0 0.9999 0.7500 6 8 ( 576 1cf7_A) ( 4895 1p4x_A) 0.8333 0.7143 2.1316 ( 0 9 10) 0 0.8333 0.7143 6 7 ( 576 1cf7_A) ( 4986 1pdn_C) nil ( 576 1cf7_A) ( 5074 1pp7_U) 0.8778 0.5874 3.0661 ( 1 11 15) 0 0.8778 0.5874 6 10 ( 576 1cf7_A) ( 5110 1pue_E) 0.8332 0.7142 3.1182 ( 0 8 10) 0 0.8332 0.7142 6 7 ( 576 1cf7_A) ( 5180 1q1h_A) 0.6630 0.5697 9.2799 ( 0 5 6) 0 0.6630 0.5697 6 7 ( 576 1cf7_A) ( 5508 1qzz_A) nil ( 576 1cf7_A) ( 5612 1rep_C) 0.7241 0.4473 7.1665 ( 1 9 10) 0 0.7241 0.4473 6 11 ( 576 1cf7_A) ( 5613 1rep_C) 0.9989 0.7497 4.1498 ( 0 10 15) 0 0.9989 0.7497 6 8 ( 576 1cf7_A) ( 5750 1s29_A) 0.8318 0.6246 5.6138 ( 0 9 10) 0 0.8318 0.6246 6 8 ( 576 1cf7_A) ( 5764 1s3j_A) 0.9999 0.6667 1.6448 ( 0 13 15) 0 0.9999 0.6667 6 9 ( 576 1cf7_A) ( 5776 1s7a_A) 0.6660 0.6660 6.0129 ( 0 5 6) 0 0.6660 0.6660 6 6 ( 576 1cf7_A) ( 5829 1smt_A) 0.4850 0.4738 1.7220 ( 2 10 10) 0 0.4850 0.4738 6 7 ( 576 1cf7_A) ( 5959 1ub9_A) 0.9999 0.7500 2.0479 ( 0 12 15) 0 0.9999 0.7500 6 8 ( 576 1cf7_A) ( 5972 1ucr_A) 0.8333 0.8333 2.2623 ( 0 9 10) 0 0.8333 0.8333 6 6 ( 576 1cf7_A) ( 6025 1uhw_A) 0.3880 0.3880 5.9437 ( 1 4 6) 0 0.3880 0.3880 6 6 ( 576 1cf7_A) ( 6346 1xgs_A) 0.6666 0.6666 3.7228 ( 0 6 6) 0 0.8330 0.8330 6 6 ( 576 1cf7_A) ( 6450 2fok_A) 0.8333 0.5000 2.3455 ( 0 9 10) 0 0.8333 0.5000 6 10 ( 576 1cf7_A) ( 6451 2fok_A) 0.4663 0.3418 8.6934 ( 1 5 6) 0 0.4663 0.3418 6 11 ( 576 1cf7_A) ( 6476 2hts ) 0.6665 0.5714 4.2047 ( 0 3 6) 0 0.6665 0.5945 6 7 ( 576 1cf7_A) ( 6480 2irf_G) 0.9258 0.8198 5.2088 ( 1 13 15) 0 0.9258 0.8198 6 7 -------------------------------------------------------------------------------------------------------------------------