------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5613 1rep_C) ( 288 1b4a_A) 0.4204 0.4668 4.6117 ( 1 5 6) 0 0.4204 0.4668 8 6 ( 5613 1rep_C) ( 328 1b9m_A) 0.4994 0.3998 8.3020 ( 0 6 6) 0 0.4994 0.3998 8 10 ( 5613 1rep_C) ( 410 1bja_A) 0.4997 0.5709 6.9545 ( 0 5 6) 0 0.4997 0.5709 8 7 ( 5613 1rep_C) ( 424 1bm9_A) 0.5000 0.6665 4.3290 ( 0 3 6) 0 0.5000 0.6665 8 6 ( 5613 1rep_C) ( 509 1c20_A) 0.5000 0.5000 3.8385 ( 0 5 6) 0 0.5000 0.5000 8 8 ( 5613 1rep_C) ( 576 1cf7_A) 0.7497 0.9989 4.1498 ( 0 10 15) 0 0.7497 0.9989 8 6 ( 5613 1rep_C) ( 904 1dp7_P) 0.7494 0.8559 5.1163 ( 0 10 15) 0 0.7494 0.8559 8 7 ( 5613 1rep_C) ( 997 1e17_A) 0.4204 0.4667 6.0281 ( 1 5 6) 0 0.4204 0.4667 8 6 ( 5613 1rep_C) ( 1461 1fc3_A) 0.4994 0.4994 8.2642 ( 0 5 6) 0 0.4994 0.4994 8 8 ( 5613 1rep_C) ( 1576 1fnn_A) 0.6248 0.7138 5.0473 ( 0 7 10) 0 0.6248 0.7138 8 7 ( 5613 1rep_C) ( 1595 1fp1_D) 0.4204 0.4204 5.1362 ( 1 5 6) 0 0.4204 0.4204 8 8 ( 5613 1rep_C) ( 1597 1fp2_A) 0.5526 0.5526 4.7266 ( 1 7 10) 0 0.6496 0.6496 8 8 ( 5613 1rep_C) ( 1664 1fzp_B) nil ( 5613 1rep_C) ( 1973 1gvj_A) 0.7493 0.5453 5.1932 ( 0 9 15) 0 0.7493 0.5453 8 11 ( 5613 1rep_C) ( 1999 1gxq_A) 0.6249 0.5555 3.8806 ( 0 7 10) 0 0.6249 0.5555 8 9 ( 5613 1rep_C) ( 2162 1hbx_G) 0.5525 0.4363 4.9753 ( 1 7 10) 0 0.5525 0.4363 8 11 ( 5613 1rep_C) ( 2224 1hkq_A) 0.7000 0.5819 3.8464 ( 1 10 15) 0 0.7000 0.5819 8 10 ( 5613 1rep_C) ( 2278 1hsj_A) 0.6247 0.7138 5.2180 ( 0 7 10) 0 0.6247 0.7138 8 7 ( 5613 1rep_C) ( 2410 1i5z_A) 0.7000 0.8404 4.2016 ( 1 10 15) 0 0.7000 0.8404 8 6 ( 5613 1rep_C) ( 2482 1ig6_A) 0.4999 0.6664 5.0075 ( 0 5 6) 0 0.4999 0.6664 8 6 ( 5613 1rep_C) ( 2544 1in4_A) 0.4365 0.4418 4.1470 ( 2 9 15) 0 0.4365 0.4418 8 7 ( 5613 1rep_C) ( 2703 1j1v_A) 0.4997 0.6654 7.1256 ( 0 5 6) 0 0.4997 0.6654 8 6 ( 5613 1rep_C) ( 2862 1jgs_A) 0.3667 0.3667 11.4340 ( 1 4 6) 1 0.3667 0.3667 8 8 ( 5613 1rep_C) ( 2871 1jhg_A) 0.4997 0.6654 7.0684 ( 0 5 6) 0 0.4997 0.6654 8 6 ( 5613 1rep_C) ( 3237 1ka8_A) 0.6246 0.6246 5.8416 ( 0 7 10) 0 0.6246 0.6246 8 8 ( 5613 1rep_C) ( 3296 1kgs_A) 0.6249 0.5555 3.8195 ( 0 7 10) 0 0.6249 0.5555 8 9 ( 5613 1rep_C) ( 3338 1kkx_A) 0.5000 0.6665 4.1707 ( 0 4 6) 0 0.5000 0.6665 8 6 ( 5613 1rep_C) ( 3438 1ku9_A) 0.4990 0.4990 9.4683 ( 0 5 6) 0 0.4990 0.4990 8 8 ( 5613 1rep_C) ( 3604 1ldj_A) 0.7452 0.9803 8.5838 ( 0 10 15) 0 0.7452 0.9803 8 6 ( 5613 1rep_C) ( 3639 1lj9_A) nil ( 5613 1rep_C) ( 3681 1lnw_A) 0.3668 0.3668 10.7570 ( 1 4 6) 1 0.3668 0.3668 8 8 ( 5613 1rep_C) ( 3746 1lva_A) nil ( 5613 1rep_C) ( 3748 1lva_A) nil ( 5613 1rep_C) ( 3934 1mij_A) nil ( 5613 1rep_C) ( 3960 1mkm_A) 0.2462 0.2487 10.3920 ( 2 5 6) 1 0.2462 0.2487 8 6 ( 5613 1rep_C) ( 4082 1mzb_A) 0.4987 0.3996 10.3164 ( 0 5 6) 0 0.4987 0.3996 8 10 ( 5613 1rep_C) ( 4537 1o7f_A) 0.6993 0.6368 6.0564 ( 1 10 15) 0 0.6993 0.6368 8 9 ( 5613 1rep_C) ( 4697 1okr_A) nil ( 5613 1rep_C) ( 4714 1omi_A) 0.7495 0.5998 4.8297 ( 0 10 15) 0 0.7495 0.5998 8 10 ( 5613 1rep_C) ( 4745 1opc ) 0.5526 0.5110 3.7610 ( 1 7 10) 0 0.5526 0.5110 8 9 ( 5613 1rep_C) ( 4840 1oyw_A) 0.4204 0.3671 4.6558 ( 1 5 6) 0 0.4204 0.3671 8 10 ( 5613 1rep_C) ( 4872 1p2f_A) 0.6249 0.6249 3.8565 ( 0 7 10) 0 0.6249 0.6249 8 8 ( 5613 1rep_C) ( 4894 1p4x_A) 0.7496 0.7496 4.5866 ( 0 10 15) 0 0.7496 0.7496 8 8 ( 5613 1rep_C) ( 4895 1p4x_A) nil ( 5613 1rep_C) ( 4986 1pdn_C) nil ( 5613 1rep_C) ( 5074 1pp7_U) 0.7000 0.5819 4.0868 ( 1 10 15) 0 0.7000 0.5819 8 10 ( 5613 1rep_C) ( 5110 1pue_E) 0.6997 0.7686 5.3242 ( 1 10 15) 0 0.6997 0.7686 8 7 ( 5613 1rep_C) ( 5180 1q1h_A) 0.3669 0.3788 9.8842 ( 1 4 6) 1 0.3669 0.3788 8 7 ( 5613 1rep_C) ( 5508 1qzz_A) 0.1661 0.1665 13.1060 ( 3 5 6) 0 0.1661 0.1665 8 6 ( 5613 1rep_C) ( 5612 1rep_C) 0.6224 0.4540 9.2403 ( 0 5 10) 0 0.6224 0.4540 8 11 ( 5613 1rep_C) ( 5613 1rep_C) 1.0000 1.0000 0.0000 ( 0 19 28) 0 1.0000 1.0000 8 8 ( 5613 1rep_C) ( 5750 1s29_A) 0.4999 0.4999 5.4744 ( 0 3 6) 0 0.4999 0.4999 8 8 ( 5613 1rep_C) ( 5764 1s3j_A) 0.7496 0.6664 4.7012 ( 0 10 15) 0 0.7496 0.6664 8 9 ( 5613 1rep_C) ( 5776 1s7a_A) 0.1662 0.1665 10.5274 ( 3 5 6) 0 0.1662 0.1665 8 6 ( 5613 1rep_C) ( 5829 1smt_A) 0.3668 0.3787 10.4685 ( 1 4 6) 1 0.3668 0.3787 8 7 ( 5613 1rep_C) ( 5959 1ub9_A) 0.7495 0.7495 4.9211 ( 0 10 15) 0 0.7495 0.7495 8 8 ( 5613 1rep_C) ( 5972 1ucr_A) 0.6249 0.8330 3.7769 ( 0 7 10) 0 0.6249 0.8330 8 6 ( 5613 1rep_C) ( 6025 1uhw_A) 0.3670 0.3879 6.9357 ( 1 4 6) 0 0.3670 0.3879 8 6 ( 5613 1rep_C) ( 6346 1xgs_A) 0.4998 0.6658 6.4439 ( 0 5 6) 0 0.6248 0.8325 8 6 ( 5613 1rep_C) ( 6450 2fok_A) 0.6248 0.4999 4.9926 ( 0 6 10) 0 0.7486 0.5995 8 10 ( 5613 1rep_C) ( 6451 2fok_A) 0.2462 0.2377 8.4435 ( 2 5 6) 0 0.8177 0.6232 8 11 ( 5613 1rep_C) ( 6476 2hts ) 0.5526 0.5944 4.0890 ( 1 7 10) 0 0.5526 0.5944 8 7 ( 5613 1rep_C) ( 6480 2irf_G) 0.6996 0.7686 5.3964 ( 1 10 15) 0 0.6996 0.7686 8 7 -------------------------------------------------------------------------------------------------------------------------