------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5110 1pue_E) ( 288 1b4a_A) 0.4918 0.5289 4.2719 ( 1 6 6) 0 0.4918 0.5289 7 6 ( 5110 1pue_E) ( 328 1b9m_A) 0.5690 0.3996 10.1608 ( 0 5 6) 0 0.5690 0.3996 7 10 ( 5110 1pue_E) ( 410 1bja_A) 0.5714 0.5714 3.1914 ( 0 6 6) 0 0.5714 0.5714 7 7 ( 5110 1pue_E) ( 424 1bm9_A) 0.5713 0.6663 5.0634 ( 0 5 6) 0 0.5713 0.6663 7 6 ( 5110 1pue_E) ( 509 1c20_A) nil ( 5110 1pue_E) ( 576 1cf7_A) 0.7142 0.8332 3.1182 ( 0 8 10) 0 0.7142 0.8332 7 6 ( 5110 1pue_E) ( 904 1dp7_P) 0.6566 0.6566 5.4631 ( 1 9 10) 0 0.6566 0.6566 7 7 ( 5110 1pue_E) ( 997 1e17_A) 0.4917 0.5288 4.7971 ( 1 6 6) 0 0.4917 0.5288 7 6 ( 5110 1pue_E) ( 1461 1fc3_A) nil ( 5110 1pue_E) ( 1576 1fnn_A) 0.7141 0.7141 3.8963 ( 0 9 10) 0 0.7141 0.7141 7 7 ( 5110 1pue_E) ( 1595 1fp1_D) 0.5713 0.4999 5.2519 ( 0 6 6) 0 0.6732 0.6027 7 8 ( 5110 1pue_E) ( 1597 1fp2_A) 0.6740 0.6031 3.9221 ( 1 10 10) 0 0.6740 0.6031 7 8 ( 5110 1pue_E) ( 1664 1fzp_B) nil ( 5110 1pue_E) ( 1973 1gvj_A) 0.8208 0.5413 1.7417 ( 1 13 15) 0 0.8208 0.5413 7 11 ( 5110 1pue_E) ( 1999 1gxq_A) 0.7140 0.5555 4.5485 ( 0 10 10) 0 0.7140 0.5555 7 9 ( 5110 1pue_E) ( 2162 1hbx_G) 0.9999 0.6364 2.0235 ( 0 18 21) 0 0.9999 0.6364 7 11 ( 5110 1pue_E) ( 2224 1hkq_A) 0.5714 0.4000 3.3765 ( 0 5 6) 0 0.5714 0.4000 7 10 ( 5110 1pue_E) ( 2278 1hsj_A) 0.1332 0.1332 9.2676 ( 3 4 6) 0 0.3788 0.3788 7 7 ( 5110 1pue_E) ( 2410 1i5z_A) 0.6052 0.6238 2.9373 ( 2 13 15) 0 0.6052 0.6238 7 6 ( 5110 1pue_E) ( 2482 1ig6_A) nil ( 5110 1pue_E) ( 2544 1in4_A) 0.5714 0.5714 2.9613 ( 0 6 6) 0 0.5714 0.5714 7 7 ( 5110 1pue_E) ( 2703 1j1v_A) nil ( 5110 1pue_E) ( 2862 1jgs_A) 0.5714 0.5000 3.3069 ( 0 6 6) 0 0.5714 0.5000 7 8 ( 5110 1pue_E) ( 2871 1jhg_A) nil ( 5110 1pue_E) ( 3237 1ka8_A) 0.6560 0.5925 6.8718 ( 1 9 10) 0 0.6560 0.5925 7 8 ( 5110 1pue_E) ( 3296 1kgs_A) 0.7139 0.5554 4.9017 ( 0 8 10) 0 0.7139 0.5554 7 9 ( 5110 1pue_E) ( 3338 1kkx_A) nil ( 5110 1pue_E) ( 3438 1ku9_A) 0.1993 0.1987 5.6810 ( 3 6 6) 0 0.1993 0.1987 7 8 ( 5110 1pue_E) ( 3604 1ldj_A) 0.8126 0.9127 8.7874 ( 1 13 15) 0 0.8126 0.9127 7 6 ( 5110 1pue_E) ( 3639 1lj9_A) 0.5714 0.5000 3.6902 ( 0 6 6) 0 0.5714 0.5000 7 8 ( 5110 1pue_E) ( 3681 1lnw_A) 0.5714 0.5000 3.2937 ( 0 6 6) 0 0.5714 0.5000 7 8 ( 5110 1pue_E) ( 3746 1lva_A) 0.7140 0.8327 4.4810 ( 0 9 10) 0 0.7140 0.8327 7 6 ( 5110 1pue_E) ( 3748 1lva_A) 0.7141 0.8329 4.1262 ( 0 9 10) 0 0.7141 0.8329 7 6 ( 5110 1pue_E) ( 3934 1mij_A) nil ( 5110 1pue_E) ( 3960 1mkm_A) 0.5714 0.6666 3.6374 ( 0 6 6) 0 0.5714 0.6666 7 6 ( 5110 1pue_E) ( 4082 1mzb_A) 0.3790 0.3363 7.4287 ( 1 4 6) 0 0.5684 0.5044 7 10 ( 5110 1pue_E) ( 4537 1o7f_A) 0.8566 0.6665 4.2009 ( 0 14 15) 0 0.8566 0.6665 7 9 ( 5110 1pue_E) ( 4697 1okr_A) 0.6739 0.6030 4.7797 ( 1 10 10) 0 0.6739 0.6030 7 8 ( 5110 1pue_E) ( 4714 1omi_A) 0.9762 0.6958 4.4502 ( 1 18 21) 0 0.9762 0.6958 7 10 ( 5110 1pue_E) ( 4745 1opc ) 0.6738 0.5430 4.9216 ( 1 10 10) 0 0.6738 0.5430 7 9 ( 5110 1pue_E) ( 4840 1oyw_A) 0.6566 0.4886 5.6367 ( 1 9 10) 0 0.6566 0.4886 7 10 ( 5110 1pue_E) ( 4872 1p2f_A) 0.7140 0.6249 4.3014 ( 0 9 10) 0 0.7140 0.6249 7 8 ( 5110 1pue_E) ( 4894 1p4x_A) 0.7142 0.6249 3.5198 ( 0 8 10) 0 0.7142 0.6249 7 8 ( 5110 1pue_E) ( 4895 1p4x_A) 0.7139 0.7139 4.9743 ( 0 9 10) 0 0.7139 0.7139 7 7 ( 5110 1pue_E) ( 4986 1pdn_C) 0.2478 0.2462 6.5839 ( 2 5 6) 0 0.2478 0.2462 7 8 ( 5110 1pue_E) ( 5074 1pp7_U) 0.7650 0.6367 4.0219 ( 2 17 21) 0 0.7650 0.6367 7 10 ( 5110 1pue_E) ( 5110 1pue_E) 1.0000 1.0000 0.0000 ( 0 20 21) 0 1.0000 1.0000 7 7 ( 5110 1pue_E) ( 5180 1q1h_A) 0.5714 0.5714 3.8421 ( 0 5 6) 0 0.5714 0.5714 7 7 ( 5110 1pue_E) ( 5508 1qzz_A) nil ( 5110 1pue_E) ( 5612 1rep_C) 0.7132 0.4544 6.1965 ( 0 9 10) 0 0.7132 0.4544 7 11 ( 5110 1pue_E) ( 5613 1rep_C) 0.7686 0.6997 5.3242 ( 1 10 15) 0 0.7686 0.6997 7 8 ( 5110 1pue_E) ( 5750 1s29_A) 0.7138 0.6248 4.9918 ( 0 10 10) 0 0.7138 0.6248 7 8 ( 5110 1pue_E) ( 5764 1s3j_A) 0.8291 0.6583 3.8318 ( 1 14 15) 0 0.8291 0.6583 7 9 ( 5110 1pue_E) ( 5776 1s7a_A) 0.5709 0.6654 7.0607 ( 0 6 6) 0 0.5709 0.6654 7 6 ( 5110 1pue_E) ( 5829 1smt_A) 0.5714 0.5714 3.2285 ( 0 6 6) 0 0.5714 0.5714 7 7 ( 5110 1pue_E) ( 5959 1ub9_A) 0.8084 0.7235 4.5654 ( 1 12 15) 0 0.8084 0.7235 7 8 ( 5110 1pue_E) ( 5972 1ucr_A) 0.7138 0.8324 5.0296 ( 0 9 10) 0 0.7138 0.8324 7 6 ( 5110 1pue_E) ( 6025 1uhw_A) 0.4916 0.5286 6.5375 ( 1 6 6) 0 0.4916 0.5286 7 6 ( 5110 1pue_E) ( 6346 1xgs_A) 0.5710 0.6657 6.6625 ( 0 6 6) 0 0.7131 0.8308 7 6 ( 5110 1pue_E) ( 6450 2fok_A) 0.7140 0.4999 4.5763 ( 0 9 10) 0 0.7140 0.4999 7 10 ( 5110 1pue_E) ( 6451 2fok_A) 0.7141 0.4545 3.7879 ( 0 9 10) 0 0.7141 0.4545 7 11 ( 5110 1pue_E) ( 6476 2hts ) 0.7142 0.7142 3.3240 ( 0 7 10) 0 0.7142 0.7142 7 7 ( 5110 1pue_E) ( 6480 2irf_G) 0.9995 0.9995 3.3347 ( 0 20 21) 0 0.9995 0.9995 7 7 -------------------------------------------------------------------------------------------------------------------------