------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3960 1mkm_A) ( 288 1b4a_A) 0.7258 0.7258 4.2475 ( 1 9 10) 0 0.7258 0.7258 6 6 ( 3960 1mkm_A) ( 328 1b9m_A) 0.9962 0.5997 5.6138 ( 0 11 15) 0 0.9962 0.5997 6 10 ( 3960 1mkm_A) ( 410 1bja_A) 0.9989 0.8566 4.1620 ( 0 13 15) 0 0.9989 0.8566 6 7 ( 3960 1mkm_A) ( 424 1bm9_A) 0.8329 0.8329 4.1547 ( 0 9 10) 0 0.8329 0.8329 6 6 ( 3960 1mkm_A) ( 509 1c20_A) 0.2967 0.2908 13.2421 ( 2 6 6) 0 0.2967 0.2908 6 8 ( 3960 1mkm_A) ( 576 1cf7_A) 0.4850 0.4850 2.1674 ( 2 10 10) 0 0.4850 0.4850 6 6 ( 3960 1mkm_A) ( 904 1dp7_P) 0.5286 0.4916 6.6315 ( 1 6 6) 0 0.5286 0.4916 6 7 ( 3960 1mkm_A) ( 997 1e17_A) 0.8330 0.8330 3.8159 ( 0 10 10) 0 0.8330 0.8330 6 6 ( 3960 1mkm_A) ( 1461 1fc3_A) 0.6661 0.4999 5.7716 ( 0 6 6) 0 0.6661 0.4999 6 8 ( 3960 1mkm_A) ( 1576 1fnn_A) 0.8298 0.7126 6.9456 ( 0 7 10) 0 0.8298 0.7126 6 7 ( 3960 1mkm_A) ( 1595 1fp1_D) 0.9965 0.7492 5.5224 ( 0 12 15) 0 0.9965 0.7492 6 8 ( 3960 1mkm_A) ( 1597 1fp2_A) 0.7550 0.6031 3.9962 ( 1 10 10) 0 0.7550 0.6031 6 8 ( 3960 1mkm_A) ( 1664 1fzp_B) nil ( 3960 1mkm_A) ( 1973 1gvj_A) 0.6666 0.3636 3.0080 ( 0 4 6) 0 0.6666 0.3636 6 11 ( 3960 1mkm_A) ( 1999 1gxq_A) 0.4850 0.4408 2.7695 ( 2 10 10) 0 0.4850 0.4408 6 9 ( 3960 1mkm_A) ( 2162 1hbx_G) 0.6666 0.3636 3.8853 ( 0 4 6) 0 0.6666 0.3636 6 11 ( 3960 1mkm_A) ( 2224 1hkq_A) 0.4659 0.3668 10.0273 ( 1 5 6) 0 0.4659 0.3668 6 10 ( 3960 1mkm_A) ( 2278 1hsj_A) 0.5289 0.4918 2.2858 ( 1 6 6) 0 0.5289 0.4918 6 7 ( 3960 1mkm_A) ( 2410 1i5z_A) 0.7261 0.7261 2.5492 ( 1 9 10) 0 0.7261 0.7261 6 6 ( 3960 1mkm_A) ( 2482 1ig6_A) 0.5288 0.5288 4.6989 ( 1 6 6) 0 0.5288 0.5288 6 6 ( 3960 1mkm_A) ( 2544 1in4_A) 0.9989 0.8566 4.1474 ( 0 12 15) 0 0.9989 0.8566 6 7 ( 3960 1mkm_A) ( 2703 1j1v_A) 0.2968 0.2968 12.6672 ( 2 6 6) 0 0.2968 0.2968 6 6 ( 3960 1mkm_A) ( 2862 1jgs_A) 0.9936 0.7485 6.4238 ( 0 12 15) 0 0.9936 0.7485 6 8 ( 3960 1mkm_A) ( 2871 1jhg_A) 0.5288 0.5288 4.8135 ( 1 6 6) 0 0.5288 0.5288 6 6 ( 3960 1mkm_A) ( 3237 1ka8_A) 0.6636 0.4993 8.8422 ( 0 6 6) 0 0.6636 0.4993 6 8 ( 3960 1mkm_A) ( 3296 1kgs_A) 0.3949 0.3769 3.0112 ( 2 8 10) 0 0.3949 0.3769 6 9 ( 3960 1mkm_A) ( 3338 1kkx_A) nil ( 3960 1mkm_A) ( 3438 1ku9_A) 0.6233 0.5808 6.3717 ( 2 13 15) 0 0.6233 0.5808 6 8 ( 3960 1mkm_A) ( 3604 1ldj_A) 0.4848 0.4848 6.4311 ( 2 10 10) 0 0.4848 0.4848 6 6 ( 3960 1mkm_A) ( 3639 1lj9_A) 0.9942 0.7486 6.2549 ( 0 12 15) 0 0.9942 0.7486 6 8 ( 3960 1mkm_A) ( 3681 1lnw_A) 0.9955 0.7489 5.8632 ( 0 12 15) 0 0.9955 0.7489 6 8 ( 3960 1mkm_A) ( 3746 1lva_A) 0.4409 0.4409 2.8099 ( 2 9 10) 0 0.4409 0.4409 6 6 ( 3960 1mkm_A) ( 3748 1lva_A) 0.4667 0.4667 6.1716 ( 1 5 6) 0 0.4667 0.4667 6 6 ( 3960 1mkm_A) ( 3934 1mij_A) 0.4665 0.4665 7.4493 ( 1 5 6) 0 0.4665 0.4665 6 6 ( 3960 1mkm_A) ( 3960 1mkm_A) 1.0000 1.0000 0.0000 ( 0 13 15) 0 1.0000 1.0000 6 6 ( 3960 1mkm_A) ( 4082 1mzb_A) 0.8333 0.5000 2.1789 ( 0 9 10) 0 0.8333 0.5000 6 10 ( 3960 1mkm_A) ( 4537 1o7f_A) 0.6612 0.4437 10.2600 ( 0 5 6) 0 0.6612 0.4437 6 9 ( 3960 1mkm_A) ( 4697 1okr_A) 0.7552 0.6032 3.1688 ( 1 10 10) 0 0.7552 0.6032 6 8 ( 3960 1mkm_A) ( 4714 1omi_A) 0.4666 0.3670 6.7776 ( 1 5 6) 0 0.6606 0.3995 6 10 ( 3960 1mkm_A) ( 4745 1opc ) 0.7552 0.5431 2.7597 ( 1 10 10) 0 0.7552 0.5431 6 9 ( 3960 1mkm_A) ( 4840 1oyw_A) 0.9983 0.5999 4.5839 ( 0 12 15) 0 0.9983 0.5999 6 10 ( 3960 1mkm_A) ( 4872 1p2f_A) 0.4409 0.4240 2.4107 ( 2 9 10) 0 0.4409 0.4240 6 8 ( 3960 1mkm_A) ( 4894 1p4x_A) 0.6661 0.4999 5.7140 ( 0 5 6) 0 0.6661 0.4999 6 8 ( 3960 1mkm_A) ( 4895 1p4x_A) 0.6582 0.5675 11.4701 ( 0 4 6) 0 0.6582 0.5675 6 7 ( 3960 1mkm_A) ( 4986 1pdn_C) nil ( 3960 1mkm_A) ( 5074 1pp7_U) 0.6858 0.4825 4.2236 ( 1 8 10) 0 0.6858 0.4825 6 10 ( 3960 1mkm_A) ( 5110 1pue_E) 0.6666 0.5714 3.6374 ( 0 6 6) 0 0.6666 0.5714 6 7 ( 3960 1mkm_A) ( 5180 1q1h_A) 0.8776 0.7923 3.6203 ( 1 11 15) 0 0.8776 0.7923 6 7 ( 3960 1mkm_A) ( 5508 1qzz_A) 0.6659 0.6659 6.2907 ( 0 5 6) 0 0.6659 0.6659 6 6 ( 3960 1mkm_A) ( 5612 1rep_C) 0.5284 0.3522 7.4525 ( 1 6 6) 0 0.5284 0.3522 6 11 ( 3960 1mkm_A) ( 5613 1rep_C) 0.4666 0.4204 6.5995 ( 1 5 6) 0 0.4666 0.4204 6 8 ( 3960 1mkm_A) ( 5750 1s29_A) 0.4846 0.4586 7.9369 ( 2 10 10) 0 0.4846 0.4586 6 8 ( 3960 1mkm_A) ( 5764 1s3j_A) 0.6595 0.4435 10.9946 ( 0 4 6) 0 0.6595 0.5288 6 9 ( 3960 1mkm_A) ( 5776 1s7a_A) 0.4667 0.4667 6.3594 ( 1 5 6) 0 0.6645 0.6645 6 6 ( 3960 1mkm_A) ( 5829 1smt_A) 0.9983 0.8564 4.5931 ( 0 12 15) 0 0.9983 0.8564 6 7 ( 3960 1mkm_A) ( 5959 1ub9_A) 0.6584 0.4980 11.4194 ( 0 4 6) 0 0.6584 0.5160 6 8 ( 3960 1mkm_A) ( 5972 1ucr_A) 0.4409 0.4409 2.9420 ( 2 9 10) 0 0.4409 0.4409 6 6 ( 3960 1mkm_A) ( 6025 1uhw_A) nil ( 3960 1mkm_A) ( 6346 1xgs_A) 0.2970 0.2970 6.5376 ( 2 6 6) 0 0.4849 0.4849 6 6 ( 3960 1mkm_A) ( 6450 2fok_A) 0.5819 0.5045 4.0502 ( 2 12 15) 0 0.6618 0.5045 6 10 ( 3960 1mkm_A) ( 6451 2fok_A) 0.4663 0.3418 8.6939 ( 1 5 6) 0 0.4663 0.3418 6 11 ( 3960 1mkm_A) ( 6476 2hts ) 0.6660 0.5711 6.0986 ( 0 5 6) 0 0.6660 0.5711 6 7 ( 3960 1mkm_A) ( 6480 2irf_G) 0.6664 0.5713 4.6744 ( 0 6 6) 0 0.6664 0.5713 6 7 -------------------------------------------------------------------------------------------------------------------------