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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 5366 1qkr_A)  (  499 1c02_A)     0.5684   0.5684  10.7033 (   0    0    6)   0     0.5713   0.5713    7   7
( 5366 1qkr_A)  ( 1072 1e85_A)     0.5696   0.6628   9.4261 (   0    0    6)   0     0.5696   0.6628    7   6
( 5366 1qkr_A)  ( 1172 1ei7_A)     0.5701   0.5701   8.6363 (   0    0    6)   0     0.5701   0.5701    7   7
( 5366 1qkr_A)  ( 1724 1g4u_S)     0.7113   0.6235   8.0879 (   0    1   10)   0     0.7113   0.6235    7   8
( 5366 1qkr_A)  ( 2190 1he1_A)     0.7087   0.7087   9.4673 (   0    1   10)   0     0.7087   0.7087    7   7
( 5366 1qkr_A)  ( 2326 1hy5_A)     0.7108   0.7108   8.3801 (   0    1   10)   0     0.7108   0.7108    7   7
( 5366 1qkr_A)  ( 3003 1jog_A)     0.7110   0.8262   8.2965 (   0    1   10)   0     0.7110   0.8262    7   6
( 5366 1qkr_A)  ( 3371 1kny_A)     0.5709   0.6656   6.8011 (   0    1    6)   0     0.5709   0.6656    7   6
( 5366 1qkr_A)  ( 4011 1mqv_A)     0.7121   0.8287   7.4447 (   0    0   10)   0     0.7121   0.8287    7   6
( 5366 1qkr_A)  ( 5366 1qkr_A)     1.0000   1.0000   0.0000 (   0   10   21)   0     1.0000   1.0000    7   7
( 5366 1qkr_A)  ( 5741 1s05_A)     0.7108   0.8258   8.4081 (   0    0   10)   0     0.7108   0.8258    7   6
( 5366 1qkr_A)  ( 6384 2a0b  )     0.5665   0.5665  12.1598 (   0    0    6)   0     0.7056   0.7056    7   7

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