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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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(  499 1c02_A)  (  499 1c02_A)     1.0000   1.0000   0.0000 (   0   14   21)   0     1.0000   1.0000    7   7
(  499 1c02_A)  ( 1072 1e85_A)   nil
(  499 1c02_A)  ( 1172 1ei7_A)     0.5710   0.5710   6.4567 (   0    1    6)   0     0.5710   0.5710    7   7
(  499 1c02_A)  ( 1724 1g4u_S)     0.0999   0.0999  10.3782 (   1    1    6)   0     0.1400   0.1400    7   8
(  499 1c02_A)  ( 2190 1he1_A)     0.5709   0.5709   6.8760 (   0    1    6)   0     0.5709   0.5709    7   7
(  499 1c02_A)  ( 2326 1hy5_A)     0.1992   0.1992  11.5601 (   2    4    6)   0     0.2490   0.2490    7   7
(  499 1c02_A)  ( 3003 1jog_A)     0.5707   0.6651   7.4963 (   0    3    6)   0     0.5707   0.6651    7   6
(  499 1c02_A)  ( 3371 1kny_A)     0.5711   0.6660   5.9817 (   0    1    6)   0     0.5711   0.6660    7   6
(  499 1c02_A)  ( 4011 1mqv_A)     0.5701   0.6638   8.7337 (   0    0    6)   0     0.5701   0.6638    7   6
(  499 1c02_A)  ( 5366 1qkr_A)     0.5684   0.5684  10.7033 (   0    0    6)   0     0.5713   0.5713    7   7
(  499 1c02_A)  ( 5741 1s05_A)     0.5696   0.6628   9.4118 (   0    0    6)   0     0.5696   0.6628    7   6
(  499 1c02_A)  ( 6384 2a0b  )     0.5694   0.5694   9.7073 (   0    4    6)   0     0.5694   0.5694    7   7

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